General information for g1815.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 17.
Parent gene
- The parent gene g1815 is located on chr_3: 13160429..13161658 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1815 | g1815.t2 | TSS | g1815.t2 | 13148915 | 13148915 |
| chr_3 | g1815 | g1815.t2 | isoform | g1815.t2 | 13149200 | 13158488 |
| chr_3 | g1815 | g1815.t2 | exon | g1815.t2.exon1 | 13149200 | 13149416 |
| chr_3 | g1815 | g1815.t2 | exon | g1815.t2.exon2 | 13155960 | 13156183 |
| chr_3 | g1815 | g1815.t2 | cds | g1815.t2.CDS1 | 13156161 | 13156183 |
| chr_3 | g1815 | g1815.t2 | exon | g1815.t2.exon3 | 13157008 | 13157181 |
| chr_3 | g1815 | g1815.t2 | cds | g1815.t2.CDS2 | 13157008 | 13157181 |
| chr_3 | g1815 | g1815.t2 | exon | g1815.t2.exon4 | 13157238 | 13158081 |
| chr_3 | g1815 | g1815.t2 | cds | g1815.t2.CDS3 | 13157238 | 13158081 |
| chr_3 | g1815 | g1815.t2 | exon | g1815.t2.exon5 | 13158146 | 13158488 |
| chr_3 | g1815 | g1815.t2 | cds | g1815.t2.CDS4 | 13158146 | 13158487 |
| chr_3 | g1815 | g1815.t2 | TTS | g1815.t2 | NA | NA |
Sequences
>g1815.t2 Gene=g1815 Length=1802
GTGAGAAAAGCAAATTTGATTGAGAAAAGAAGAAATTAGTGTGATATTTTACAAGAAACG
CCAATCAATTGTGTTTCTTAGTTTGATGTCAAGTGAATAAAAACATTCATAATGGCATAA
AGTTTTGAAATTTAGACATTATTAGCTTTTATAATCATCATCATACTTAAATTCCATTGC
ATCACAAGAACAAGTTAATAAAAAGAGACAGAAACAGATCGAGTGCTTCATTAAAAATTC
ACCTTCACCCTACTACTCTTTTTCTACTTCACTTTTTTCTTCTAAGCTGCTCCAATTTCG
CATTCATACTGCCTAATAAATATGGAAATGAACACATATCGCGAAGAAAGGCGATACTCA
GTGCCACAAGGAGCTCATATGCCTCAAATGCAATTGCCACCTGCTAGTGAAGATTTGCAT
GCATGGTCAATCTATAGGCAAGCAAAATCTTAATTCAGATTTTACTGACTCGGCGTTAGG
TAGTAGTGACAAAAGTCCATTGCCATACGGGAATTTTCAATTGCGTGATACAACAGTACA
TTCAATTCTTAATCATCCACGATATGGACCAAAGTCACCATTGGGTTCAAATATGTATAC
ATATTTGAAATTTGGTTTACCAAGAGTTTTTCCACCAAATGGCTCACAACGATCACATCG
AAATGGAGCTCATCAAAGAAGTCGTGGTAGAATAAATCGAGGTTTTAATAGAGATAGTGG
CGGTGTGTCATCTGGTTATGATAGTAGTGATAATGAAACGACAAGAGGACGTATGCCACC
TAATTTAAGAAAATATAGGAGTGAATCTGATTTTAGAACAATGAATATGATGCAACAACA
ACATCCCTCCTCACGTCCTAGTTCACGAATGCACAATAATATTCCAGTAACGGCATTAAA
ACAACCAAATAGTAGAGCAAGCATAGCTGGAACTCATATAAATCATTACAATGGAAATAA
TCATACTCACTCACGATATAACCACAATCGTTCGCATAGTGAAGCAGATTTACTTGGAGG
TGAAATGGTTTATGAATATGACTCAAGAGTTTACGGTGAAACGAGAGATCCCCGAATGAG
AATGGAACAATATTCGGGAATTTCCAGACGACATTCATCTACATTAATTTATCCAAATAT
TCAAATTCATTGCCTTGATGTCGACGAAATACGTGGTGCATCACTTCAAGCCAAAGCTGG
TGATTTATTTGCAATCATGGCGACATCAAATAGAGAAGGAACGGCTTTAATAGAAACAAT
TGCTGGTTTACGAGAGAGATTAGGTGGTGAAATCCTAATTAATGGACAGCAAGTGTCTCG
AAGCATGCTGAAACAACTTTGTGGATATGTACCTGCTCTAGAAATTGCCTCACTCGATCC
TCGAATGAGCGTTCAAAATACATTGACTTATCACGCAGCACTTAAAGGTCCACTTGATAA
AAGTGACATAAAAGAAAGAATTGACATTTTAGTAGAAGATCTTGGTCTAACAGCAGTTCG
TTCATCCTGTATATCCTCCCTCACACATTCTGAAAAGCAACGATTAAATGTCGCTTGTCA
ACTTCTTACTCAATGTTCTGTATTAGTTCTTGATCAAACAACCAATAACATGGATATTTT
TGACACATTTTTTTTAGTTGAATATTTACGACAATGGTGTAGCTCAAGAATTTGCATTAT
GACACTTCAACCACCAACTTTTGAGATATTATCCATGTGTTCGGGTGTTTTGTTATTATC
GGGCGGAAGAACTATTTTTAGTGGTAATCGTGCTGATCTTCCAAGACACATGGGGCAATT
AG
>g1815.t2 Gene=g1815 Length=461
MHGQSIGKQNLNSDFTDSALGSSDKSPLPYGNFQLRDTTVHSILNHPRYGPKSPLGSNMY
TYLKFGLPRVFPPNGSQRSHRNGAHQRSRGRINRGFNRDSGGVSSGYDSSDNETTRGRMP
PNLRKYRSESDFRTMNMMQQQHPSSRPSSRMHNNIPVTALKQPNSRASIAGTHINHYNGN
NHTHSRYNHNRSHSEADLLGGEMVYEYDSRVYGETRDPRMRMEQYSGISRRHSSTLIYPN
IQIHCLDVDEIRGASLQAKAGDLFAIMATSNREGTALIETIAGLRERLGGEILINGQQVS
RSMLKQLCGYVPALEIASLDPRMSVQNTLTYHAALKGPLDKSDIKERIDILVEDLGLTAV
RSSCISSLTHSEKQRLNVACQLLTQCSVLVLDQTTNNMDIFDTFFLVEYLRQWCSSRICI
MTLQPPTFEILSMCSGVLLLSGGRTIFSGNRADLPRHMGQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1815.t2 | Gene3D | G3DSA:3.40.50.300 | - | 245 | 461 | 5.4E-29 |
| 7 | g1815.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 5 | g1815.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 124 | - |
| 6 | g1815.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 117 | - |
| 2 | g1815.t2 | PANTHER | PTHR48041:SF89 | FI03229P | 1 | 461 | 8.8E-173 |
| 3 | g1815.t2 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 1 | 461 | 8.8E-173 |
| 1 | g1815.t2 | Pfam | PF00005 | ABC transporter | 254 | 396 | 1.3E-9 |
| 9 | g1815.t2 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 236 | 461 | 10.478 |
| 4 | g1815.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 457 | 2.28E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed