General information for g1816.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1816 is located on chr_3: 13165034..13166430 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1816 | g1816.t3 | isoform | g1816.t3 | 13165034 | 13166298 |
| chr_3 | g1816 | g1816.t3 | exon | g1816.t3.exon1 | 13165034 | 13165039 |
| chr_3 | g1816 | g1816.t3 | cds | g1816.t3.CDS1 | 13165034 | 13165039 |
| chr_3 | g1816 | g1816.t3 | exon | g1816.t3.exon2 | 13165105 | 13165792 |
| chr_3 | g1816 | g1816.t3 | cds | g1816.t3.CDS2 | 13165105 | 13165792 |
| chr_3 | g1816 | g1816.t3 | exon | g1816.t3.exon3 | 13165848 | 13166298 |
| chr_3 | g1816 | g1816.t3 | cds | g1816.t3.CDS3 | 13165848 | 13166131 |
| chr_3 | g1816 | g1816.t3 | TSS | g1816.t3 | 13166516 | 13166516 |
| chr_3 | g1816 | g1816.t3 | TTS | g1816.t3 | NA | NA |
Sequences
>g1816.t3 Gene=g1816 Length=1145
ATGGATCAAATGCCGTTCGATCAGCCATCGGCAATTCTTAGGGGACCTAGACCAATAGCA
CAAAATAGCATTAGTCCGCATCAGGTATAAACATTCAATTAGCTTGTTCAAAGAACTTAA
ATATAATGTATAACCTCAATTTTTTTTTCCAGTGCTTTATTCCTGCGATGTTTCCTGTAA
TTGTAGGACCTCCATCAAATGTTCACCCATACGCGACATTTTATCGGCAACCTAGTGTGG
TGCCACCTCCAATATTACCGGTAGTACATTATACAAAGCAGCCAACGCAAGTAGAACATC
CAACTAAAAAAAGTCATGCTTTACAAATTCGTGATCCAGTAACAGGCAAAGATATCATTG
AAAGCTTTAAACATGAAAAAACTGGATCGTTAAACAAAGATGCTAAAGAATTTAGGCCAT
GTAATATTCATCAAAAGACAGCTATACAAAGTGAAAAAGACGGTACTAGAATAAAAACTT
CTTCACCGATACAAAAGAATGATGATATGTCAATTATACAAGAAGATATATCAATTGTAC
AAGAAGAAGATGTTTCCAGTCCAATTAAGTGTACAATTGGCAATGAAAATTTTACTGGTG
ACGATTTTAGTAGAAACTACAGATACACAAAGGAAGAATTATTAATGCTAAAAGAAAGTC
TTGCAGTTGAGAAATCTAAACCGCCTCAGTTTTCACATAGTTCATTGATTTGCGATGATT
TGGATTTGACTATATATAGAATACTTTTTGATAAAACCTATCAAGATTCTACCTTTAATG
ATTCATATGATATCTCAAACTCATCATATAACAAGACCAATTCTTCTTTGTCTTTAAGGC
GTAGTTTTCAAGATAGTCATTCTAGTTCTCGCAACAACAGAACACCAGAAAAGAAAAGTA
TCATTAGAATGACAATGAGTCAACCAAACATACGATTAAATGAAGCAGAAAACGCATGGG
TGCCATCGCATTTGAAACTAAAGATTCGAAAGAGTGATGAAGAAGAAAAGCTTGAAAAAC
TCAAGAAAAACTTTCGTTCATTATTAAACAAAATCACTGCTGAAAATTTTGAACATATCG
CTAAAGAAGCTTCTAATACAAACAAATTTTCAATAACTGAGAAAGAAAGTTTAGAATCGA
TTGTT
>g1816.t3 Gene=g1816 Length=326
MFPVIVGPPSNVHPYATFYRQPSVVPPPILPVVHYTKQPTQVEHPTKKSHALQIRDPVTG
KDIIESFKHEKTGSLNKDAKEFRPCNIHQKTAIQSEKDGTRIKTSSPIQKNDDMSIIQED
ISIVQEEDVSSPIKCTIGNENFTGDDFSRNYRYTKEELLMLKESLAVEKSKPPQFSHSSL
ICDDLDLTIYRILFDKTYQDSTFNDSYDISNSSYNKTNSSLSLRRSFQDSHSSSRNNRTP
EKKSIIRMTMSQPNIRLNEAENAWVPSHLKLKIRKSDEEEKLEKLKKNFRSLLNKITAEN
FEHIAKEASNTNKFSITEKESLESIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1816.t3 | Coils | Coil | Coil | 268 | 299 | - |
| 3 | g1816.t3 | Gene3D | G3DSA:1.25.40.180 | - | 251 | 324 | 2.7E-7 |
| 1 | g1816.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 244 | - |
| 2 | g1816.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 234 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed