General information for g1817.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-N-acetylglucosamine transferase subunit ALG13-like protein.
Parent gene
- The parent gene g1817 is located on chr_3: 13167292..13168994 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1817 | g1817.t1 | TSS | g1817.t1 | 13166762 | 13166762 |
| chr_3 | g1817 | g1817.t1 | isoform | g1817.t1 | 13166792 | 13167292 |
| chr_3 | g1817 | g1817.t1 | exon | g1817.t1.exon1 | 13166792 | 13167292 |
| chr_3 | g1817 | g1817.t1 | cds | g1817.t1.CDS1 | 13166792 | 13167292 |
| chr_3 | g1817 | g1817.t1 | TTS | g1817.t1 | 13167463 | 13167463 |
Sequences
>g1817.t1 Gene=g1817 Length=501
ATGAAATTTGAGAAAATCTTTATTACAGTAGGTACAACTGAATTTAATGAGTTGATAGAA
AATATATTTAATGAAAATGTATGGAAATGTTTACGAGATAAAATTGGTTGCAGAAAGTTG
AAAATTCAATATGGAAAAGGAAATAAACCTGAATTCATAAGAAAAGATGGAATCAAAGTC
GAAATTTATGATCTTAAACAATCAATTAAAAATGATATTTTGGAAGCAGATTTAATAATT
GGACATGCTGGGGCTGGTACTTGCATAGAAGTTTTAAATTTGAACAAACCTCTTATTGTT
GTAACAAATGATACTTTAATGAATCAACATCAAAGTGAATTAGCTCATCAATTGCAAAAT
GAATGTTATTTAGAGTGCACACCTTTATCTATGCTTCATAATACCTTGAATAACTTTGAT
GCTACTAAACTGAAAAAATACGAAAGTGGAAATATCAACAAGTTTATAGAATATTTGGAT
GATTATATGGGCTTTATTTAA
>g1817.t1 Gene=g1817 Length=166
MKFEKIFITVGTTEFNELIENIFNENVWKCLRDKIGCRKLKIQYGKGNKPEFIRKDGIKV
EIYDLKQSIKNDILEADLIIGHAGAGTCIEVLNLNKPLIVVTNDTLMNQHQSELAHQLQN
ECYLECTPLSMLHNTLNNFDATKLKKYESGNINKFIEYLDDYMGFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1817.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 1 | 164 | 0e+00 |
| 2 | g1817.t1 | PANTHER | PTHR12867 | GLYCOSYL TRANSFERASE-RELATED | 1 | 165 | 0e+00 |
| 3 | g1817.t1 | PANTHER | PTHR12867:SF6 | ASPARAGINE LINKED GLYCOSYLATION (ALG) HOMOLOG, NEMATODE | 1 | 165 | 0e+00 |
| 1 | g1817.t1 | Pfam | PF04101 | Glycosyltransferase family 28 C-terminal domain | 6 | 150 | 0e+00 |
| 4 | g1817.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 22 | 143 | 1e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016758 | hexosyltransferase activity | MF |
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K07432 (beta-1,4-N-acetylglucosaminyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed