General information for g1818.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase 116 kDa subunit a isoform 1.
Parent gene
- The parent gene g1818 is located on chr_3: 13168994..13169795 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1818 | g1818.t10 | isoform | g1818.t10 | 13168994 | 13169795 |
| chr_3 | g1818 | g1818.t10 | exon | g1818.t10.exon1 | 13168994 | 13169699 |
| chr_3 | g1818 | g1818.t10 | cds | g1818.t10.CDS1 | 13168995 | 13169699 |
| chr_3 | g1818 | g1818.t10 | exon | g1818.t10.exon2 | 13169763 | 13169795 |
| chr_3 | g1818 | g1818.t10 | cds | g1818.t10.CDS2 | 13169763 | 13169795 |
| chr_3 | g1818 | g1818.t10 | TSS | g1818.t10 | NA | NA |
| chr_3 | g1818 | g1818.t10 | TTS | g1818.t10 | NA | NA |
Sequences
>g1818.t10 Gene=g1818 Length=739
ATGATTGAAGCTCCATTAGAGGATCCATCTAACGGCGATAATGTTTACAAATCTGTATTC
ATTATTTTCTTCCAAGGAGATCAGTTGAAAACTCGTGTTAAGAAAATTTGTGAAGGTTTT
CGTGCAACATTATATCCATGCCCAGAAGCTCCTGCTGATCGTCGTGAAATGGCAATGGGT
GTCATGACAAGGATCGAAGATTTGAATACTGTTTTAGGACAAACTCAAGACCATCGTCAT
CGTGTGCTTGTTGCTGCAGCAAAAAATTTGAAAAATTGGTTTGTTAAAGTGCGTAAGATA
AAAGCTATTTATCATACGCTTAATCTTTTCAATTTGGATGTCACTCAAAAATGTTTGATC
GCTGAATGCTGGGTTCCTGTTCTTGATTTAGAGAGCATTCAAATGGCATTGCGAAGAGGA
ACTGAAAGAAGTGGCGGCTCTTCAGTTCCACCAATTTTGAATCGCATGGAGACTTATGAA
GATCCTCCTACTTACAATCGAACAAATAAGTTTACTAAAGCTTTTCAAGCTCTGATTGAT
GCATATGGTGTAGCAAGTTATCGTGAAATGAATCCTGCACCATATACTATCATTACATTC
CCATTTTTGTTCGCTGTGATGTTTGGTGATTTGGGTCACGGAACTATAATGGCTCTCTTT
GGATTATGGATGATTTTGAAAGAAAAACCATTATCGGCAAAAAAATCTGATAATGAGATT
TGGAACATTTTCTTCGGTG
>g1818.t10 Gene=g1818 Length=246
MIEAPLEDPSNGDNVYKSVFIIFFQGDQLKTRVKKICEGFRATLYPCPEAPADRREMAMG
VMTRIEDLNTVLGQTQDHRHRVLVAAAKNLKNWFVKVRKIKAIYHTLNLFNLDVTQKCLI
AECWVPVLDLESIQMALRRGTERSGGSSVPPILNRMETYEDPPTYNRTNKFTKAFQALID
AYGVASYREMNPAPYTIITFPFLFAVMFGDLGHGTIMALFGLWMILKEKPLSAKKSDNEI
WNIFFG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1818.t10 | PANTHER | PTHR11629 | VACUOLAR PROTON ATPASES | 2 | 244 | 2.3E-123 |
| 3 | g1818.t10 | PANTHER | PTHR11629:SF68 | V-TYPE PROTON ATPASE 116 KDA SUBUNIT A ISOFORM 1 | 2 | 244 | 2.3E-123 |
| 1 | g1818.t10 | Pfam | PF01496 | V-type ATPase 116kDa subunit family | 2 | 245 | 1.2E-106 |
| 6 | g1818.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 199 | - |
| 7 | g1818.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 200 | 226 | - |
| 5 | g1818.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 227 | 246 | - |
| 4 | g1818.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 226 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0033179 | proton-transporting V-type ATPase, V0 domain | CC |
| GO:1902600 | proton transmembrane transport | BP |
| GO:0015078 | proton transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
