General information for g1826.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutarate-semialdehyde dehydrogenase.
Parent gene
- The parent gene g1826 is located on chr_3: 13206485..13210007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1826 | g1826.t13 | isoform | g1826.t13 | 13206485 | 13207189 |
| chr_3 | g1826 | g1826.t13 | exon | g1826.t13.exon1 | 13206485 | 13206553 |
| chr_3 | g1826 | g1826.t13 | cds | g1826.t13.CDS1 | 13206486 | 13206553 |
| chr_3 | g1826 | g1826.t13 | exon | g1826.t13.exon2 | 13206612 | 13206825 |
| chr_3 | g1826 | g1826.t13 | cds | g1826.t13.CDS2 | 13206612 | 13206825 |
| chr_3 | g1826 | g1826.t13 | exon | g1826.t13.exon3 | 13206884 | 13207189 |
| chr_3 | g1826 | g1826.t13 | cds | g1826.t13.CDS3 | 13206884 | 13207189 |
| chr_3 | g1826 | g1826.t13 | TSS | g1826.t13 | 13207183 | 13207183 |
| chr_3 | g1826 | g1826.t13 | TTS | g1826.t13 | NA | NA |
Sequences
>g1826.t13 Gene=g1826 Length=589
ATGATTAGTCTATCGCAAAGAGTCTTCCAATTTGGAGCAATCAAATTTAATTCTACAAAT
AAGATTCAATTGGTTAGAATGATGCATTCTCTGATTAAAAACCAAGCCTACATTAATGGA
AAGTGGACAAATGCAGCTAACAATAAAACATTTAGTGTAATGAATCCATCAAATCAAGAA
ATAGTTGCACAAGTTCCTGATATGACTAAAATTGATTGTCAAAAAGCAATTGATGCAGCT
AATGATGCATTTTATTCAAAAGAATGGCGTAATGCCACAGCTAAAGATCGATCTACATTA
CTAAAGAAATGGTTTACACTTTTGGAAGCGAATAAACAAGAAATTGCTCAAATAATGACA
ACTGAGAGTGGCAAACCTATTGCTGAAGCGTTAGGAGAAGTAGCTTACGGAAATTCTTTT
GTTGAATGGTTTGCAGAAGAGGCAAGAAGAATTTATGGTGAAATTGTCCCTTCTCCAGTT
GCCAGCAAACAAATTAAAATTGTACGACAACCTATTGGAGTTGCTGGTCTTATCACACCT
TGGAATTTTCCACACGCAATGATAACACGAAAAGCTGCTGCTGCATTAG
>g1826.t13 Gene=g1826 Length=196
MISLSQRVFQFGAIKFNSTNKIQLVRMMHSLIKNQAYINGKWTNAANNKTFSVMNPSNQE
IVAQVPDMTKIDCQKAIDAANDAFYSKEWRNATAKDRSTLLKKWFTLLEANKQEIAQIMT
TESGKPIAEALGEVAYGNSFVEWFAEEARRIYGEIVPSPVASKQIKIVRQPIGVAGLITP
WNFPHAMITRKAAAAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1826.t13 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 26 | 196 | 0 |
| 2 | g1826.t13 | PANTHER | PTHR43353:SF5 | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 28 | 196 | 0 |
| 3 | g1826.t13 | PANTHER | PTHR43353 | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 28 | 196 | 0 |
| 1 | g1826.t13 | Pfam | PF00171 | Aldehyde dehydrogenase family | 42 | 196 | 0 |
| 4 | g1826.t13 | SUPERFAMILY | SSF53720 | ALDH-like | 22 | 196 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed