General information for g1826.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein unc-13 homolog 4B.
Parent gene
- The parent gene g1826 is located on chr_3: 13206485..13210007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1826 | g1826.t3 | isoform | g1826.t3 | 13202258 | 13202896 |
| chr_3 | g1826 | g1826.t3 | exon | g1826.t3.exon1 | 13202258 | 13202896 |
| chr_3 | g1826 | g1826.t3 | cds | g1826.t3.CDS1 | 13202260 | 13202814 |
| chr_3 | g1826 | g1826.t3 | TSS | g1826.t3 | NA | NA |
| chr_3 | g1826 | g1826.t3 | TTS | g1826.t3 | NA | NA |
Sequences
>g1826.t3 Gene=g1826 Length=639
ACCAATATCTGAAAATCCAAATGAAGACACGCTCATCATAGAAGTTTGGGATTTCGATCC
AGCAGAGACACTTAGTGAAAAAATGAATAAATTATTTGATGTGAAGGGTGCAAAAGGTTT
TCGTAAATTGATGAAAGAAATAGCCAGCACTGCTTCATCTGGAAAGCATGACAATGAATT
TGTTGGTTCATCAAAAGTTCCTTTAAAAACAGTTCCTGCTAGTGGCCTTACAATGTGGTA
TAATCTTGATAAGAAAGGGAAAATGAAAACTCAAGGAACAATCAAAGTTCGTCTTAACTT
CAGTAGTGAAAAGAATGATCAAGTCGCTTCACAAGAACATCGACATTTATTGAAAATTCT
TCTTTATCATGAACTTGAATCATCGAAAGTTGCACCGTATTGGTGGGCAGGAAAATTTAA
TCAAGTGGCTGAAATGATCATTACTCAGCATCAAGCACAGAGTGGATTAACTGATATTGA
TGTTGCATTTGCGCAATGGAGCGTTTTTTCTGAAGTTCATCAACAGCATCCTTTGTCATT
TGAATTATTTGAAAATATTCTTGAAACTTTAATAAGACCAATTCAAACGAATAGTGTAAG
TCATTCAGAAGAACTATCATTATTTTGGGAAGCTACAAA
>g1826.t3 Gene=g1826 Length=185
MNKLFDVKGAKGFRKLMKEIASTASSGKHDNEFVGSSKVPLKTVPASGLTMWYNLDKKGK
MKTQGTIKVRLNFSSEKNDQVASQEHRHLLKILLYHELESSKVAPYWWAGKFNQVAEMII
TQHQAQSGLTDIDVAFAQWSVFSEVHQQHPLSFELFENILETLIRPIQTNSVSHSEELSL
FWEAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g1826.t3 | Gene3D | G3DSA:2.60.40.150 | - | 16 | 92 | 1.3e-05 |
| 1 | g1826.t3 | PANTHER | PTHR45999:SF2 | PROTEIN UNC-13 HOMOLOG 4B | 1 | 185 | 0.0e+00 |
| 2 | g1826.t3 | PANTHER | PTHR45999 | UNC-13-4A, ISOFORM B | 1 | 185 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
