General information for g1841.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphorylase b kinase gamma catalytic chain, liver/testis isoform.
Parent gene
- The parent gene g1841 is located on chr_3: 13260701..13261369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1841 | g1841.t10 | TTS | g1841.t10 | 13254002 | 13254002 |
| chr_3 | g1841 | g1841.t10 | isoform | g1841.t10 | 13254268 | 13259074 |
| chr_3 | g1841 | g1841.t10 | exon | g1841.t10.exon1 | 13254268 | 13254402 |
| chr_3 | g1841 | g1841.t10 | exon | g1841.t10.exon2 | 13254471 | 13254633 |
| chr_3 | g1841 | g1841.t10 | cds | g1841.t10.CDS1 | 13254611 | 13254633 |
| chr_3 | g1841 | g1841.t10 | exon | g1841.t10.exon3 | 13255060 | 13255339 |
| chr_3 | g1841 | g1841.t10 | cds | g1841.t10.CDS2 | 13255060 | 13255339 |
| chr_3 | g1841 | g1841.t10 | exon | g1841.t10.exon4 | 13258763 | 13258857 |
| chr_3 | g1841 | g1841.t10 | cds | g1841.t10.CDS3 | 13258763 | 13258857 |
| chr_3 | g1841 | g1841.t10 | exon | g1841.t10.exon5 | 13258945 | 13259074 |
| chr_3 | g1841 | g1841.t10 | cds | g1841.t10.CDS4 | 13258945 | 13259062 |
| chr_3 | g1841 | g1841.t10 | TSS | g1841.t10 | 13259907 | 13259907 |
Sequences
>g1841.t10 Gene=g1841 Length=803
TGTGGTGTTATTATGTTCACACTTCTTGTCGGTTGCCCTCCATTCTGGCATCGAAAGCAG
ATGATAATGCTGCGAAATATCATGGAAGGAAAGTACAGTTTTATGTCACCCGAGTGGTCA
GATATTTCAGAGGATCCAAAAGATCTGATAAGAAAATGTCTTGTGGTTGATCCCGAGAAG
CGTATAACTGTTCGCGAAGCTTTGAAGCATCCATTCTTTAACACTAATCTAGAAGAAGTT
TACAAATCACGTATTAGTAGGATTAGTAGGATTAATAAGACAATCAATAACAGGGAATGC
AATAGTCGAATATGTCGCTTTATGTCAACAAGTGAAGCGTTATTCAGAAACGCACGTCAA
AGACATTTAAGTGGCTTAAACAATAACAGGCATATGGAAACTATTCCTCTCATCTATCAT
GATCATCAGCAAAATATATATCATAGAATAGGCAAACGCAAATGCTCATGTCTGCCGAGA
CTTTTAACTACTTGTTTCGTTAGTTATGCGTCGTCAAAGTCAATTTAATGCTAGGAAGAA
ATTTCAATTTGCTATACTATGCGTACGAGCTATGATAAGAATACAAAGATTGCGCTACAC
ACCTGAACCGCTCGACATCGAAGAAGCCTTACGCGATCCATATCGTGTCAAAGTATTGCG
TAAAGTAAGTCATCGATGCATGTGCTTTCCGCGTTTACGGCCATTGGGTCAAGAAAGGCG
AGGGACAGAATCGTGCTGCTCTCTTTGAAAACCAACCAAAAGTTGAACTTCATAACCTTT
ACATTCATCAGTTGCAAAAATAA
>g1841.t10 Gene=g1841 Length=171
MFTLLVGCPPFWHRKQMIMLRNIMEGKYSFMSPEWSDISEDPKDLIRKCLVVDPEKRITV
REALKHPFFNTNLEEVYKSRISRISRINKTINNRECNSRICRFMSTSEALFRNARQRHLS
GLNNNRHMETIPLIYHDHQQNIYHRIGKRKCSCLPRLLTTCFVSYASSKSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1841.t10 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 75 | 0.000 |
| 6 | g1841.t10 | Gene3D | G3DSA:1.10.238.10 | - | 76 | 105 | 0.000 |
| 2 | g1841.t10 | PANTHER | PTHR44167 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED | 1 | 110 | 0.000 |
| 3 | g1841.t10 | PANTHER | PTHR44167:SF7 | PHOSPHORYLASE KINASE CATALYTIC SUBUNIT GAMMA 1 | 1 | 110 | 0.000 |
| 1 | g1841.t10 | Pfam | PF00069 | Protein kinase domain | 2 | 69 | 0.000 |
| 7 | g1841.t10 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 69 | 11.496 |
| 4 | g1841.t10 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 85 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
