Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1841 g1841.t11 TTS g1841.t11 13254002 13254002
chr_3 g1841 g1841.t11 isoform g1841.t11 13254268 13259081
chr_3 g1841 g1841.t11 exon g1841.t11.exon1 13254268 13254402
chr_3 g1841 g1841.t11 cds g1841.t11.CDS1 13254268 13254402
chr_3 g1841 g1841.t11 exon g1841.t11.exon2 13254475 13254633
chr_3 g1841 g1841.t11 cds g1841.t11.CDS2 13254475 13254633
chr_3 g1841 g1841.t11 exon g1841.t11.exon3 13258760 13258857
chr_3 g1841 g1841.t11 cds g1841.t11.CDS3 13258760 13258857
chr_3 g1841 g1841.t11 exon g1841.t11.exon4 13258945 13259081
chr_3 g1841 g1841.t11 cds g1841.t11.CDS4 13258945 13259062
chr_3 g1841 g1841.t11 TSS g1841.t11 13259907 13259907

Sequences

>g1841.t11 Gene=g1841 Length=529
GTGGGCATGTGGTGTTATTATGTTCACACTTCTTGTCGGTTGCCCTCCATTCTGGCATCG
AAAGCAGATGATAATGCTGCGAAATATCATGGAAGGAAAGTACAGTTTTATGTCACCCGA
GTGGTCAGATATTTCAGAGGATCCAAAAGATCTGATAAGAAAATGTCTTGTGGTTGATCC
CGAGAAGCGTATAACTGTTCGCGAAGCTTTGAAGCATCCATTCTTTAACACTGTAATGCG
TCGTCAAAGTCAATTTAATGCTAGGAAGAAATTTCAATTTGCTATACTATGCGTACGAGC
TATGATAAGAATACAAAGATTGCGCTACACACCTGAACCGCTCGACATCGAAGAAGCCTT
ACGCGATCCATATCGTGTCAAAGTATTGCGTAAAGTCATCGATGCATGTGCTTTCCGCGT
TTACGGCCATTGGGTCAAGAAAGGCGAGGGACAGAATCGTGCTGCTCTCTTTGAAAACCA
ACCAAAAGTTGAACTTCATAACCTTTACATTCATCAGTTGCAAAAATAA

>g1841.t11 Gene=g1841 Length=169
MFTLLVGCPPFWHRKQMIMLRNIMEGKYSFMSPEWSDISEDPKDLIRKCLVVDPEKRITV
REALKHPFFNTVMRRQSQFNARKKFQFAILCVRAMIRIQRLRYTPEPLDIEEALRDPYRV
KVLRKVIDACAFRVYGHWVKKGEGQNRAALFENQPKVELHNLYIHQLQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g1841.t11 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1 75 0.000
2 g1841.t11 PANTHER PTHR44167 OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 1 166 0.000
3 g1841.t11 PANTHER PTHR44167:SF7 PHOSPHORYLASE KINASE CATALYTIC SUBUNIT GAMMA 1 1 166 0.000
9 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 61 72 0.000
5 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 77 92 0.000
4 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 93 111 0.000
8 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 112 126 0.000
7 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 127 142 0.000
6 g1841.t11 PRINTS PR01049 Phosphorylase kinase family signature 143 156 0.000
1 g1841.t11 Pfam PF00069 Protein kinase domain 2 69 0.000
12 g1841.t11 ProSiteProfiles PS50011 Protein kinase domain profile. 1 69 11.496
10 g1841.t11 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1 77 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005978 glycogen biosynthetic process BP
GO:0005524 ATP binding MF
GO:0004689 phosphorylase kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP
GO:0005516 calmodulin binding MF
GO:0005964 phosphorylase kinase complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values