Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphorylase b kinase gamma catalytic chain, liver/testis isoform.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1841 g1841.t23 TTS g1841.t23 13254002 13254002
chr_3 g1841 g1841.t23 isoform g1841.t23 13254268 13261300
chr_3 g1841 g1841.t23 exon g1841.t23.exon1 13254268 13254402
chr_3 g1841 g1841.t23 exon g1841.t23.exon2 13254475 13254633
chr_3 g1841 g1841.t23 exon g1841.t23.exon3 13257998 13258081
chr_3 g1841 g1841.t23 exon g1841.t23.exon4 13258760 13258835
chr_3 g1841 g1841.t23 cds g1841.t23.CDS1 13258801 13258835
chr_3 g1841 g1841.t23 exon g1841.t23.exon5 13258945 13259081
chr_3 g1841 g1841.t23 cds g1841.t23.CDS2 13258945 13259081
chr_3 g1841 g1841.t23 exon g1841.t23.exon6 13259167 13259257
chr_3 g1841 g1841.t23 cds g1841.t23.CDS3 13259167 13259257
chr_3 g1841 g1841.t23 exon g1841.t23.exon7 13259319 13259406
chr_3 g1841 g1841.t23 cds g1841.t23.CDS4 13259319 13259406
chr_3 g1841 g1841.t23 exon g1841.t23.exon8 13259461 13259657
chr_3 g1841 g1841.t23 cds g1841.t23.CDS5 13259461 13259657
chr_3 g1841 g1841.t23 exon g1841.t23.exon9 13259736 13259905
chr_3 g1841 g1841.t23 cds g1841.t23.CDS6 13259736 13259905
chr_3 g1841 g1841.t23 exon g1841.t23.exon10 13260718 13260878
chr_3 g1841 g1841.t23 cds g1841.t23.CDS7 13260718 13260812
chr_3 g1841 g1841.t23 exon g1841.t23.exon11 13261171 13261300
chr_3 g1841 g1841.t23 TSS g1841.t23 13261336 13261336

Sequences

>g1841.t23 Gene=g1841 Length=1428
GTATTGCTTGAGTAGTTAGAATATAAAGACAATTAAATGAAAATAGTGGAGAATTGTTGA
AAAAGTAGCATATAAGAGTGAAAGTTTATTTTTTCATTTTGTACAATTTTCTCTCGTCGG
CCAAGTGAGTGAAGATCTTTTGGGATAGTTTGTAATCATTTGAGTAGCCATTAAGTCTTT
AAGAAAACAATCAACAATGGCAAAAGATGAGCCAGATGATGATACACTTCCTGACAAAGA
CGCAGCGAAAGGTTTCTACGCAAAATATGAACCAAAAGAGGTTCTTGGACGTGGCATTTC
ATCGGTCGTACGTCGATGTATTGATAAGGAAACTGGTAAAGAGTATGCGGCAAAGATTAT
TGATTTGGGAGCATCGGACGTAAATGATTCACATCAGATGCTCGAAGCGACTCGTCAAGA
AATTAATATTTTGAGGCAAGTTATGGGTCATCCTTATATAATTGAATTGCAAGATGTATT
CGAATCTGATGCCTTTATTTTCCTTGTTTTTGAGCTATGTCGTCATGGTGAATTGTTTGA
TTATCTTACATCTGTAGTTACATTATCTGAGAAAAAGACACGTTATATTATGAGACAAAT
TTTTGAAGGTGTTGATTATATTCATTCACGCAATATCGTCCATCGTGACCTGAAACCCGA
AAATATACTCCTCGATGACAATCTTAATGTCAAAATCACAGACTTTGGGTTTGCTCGTCA
CTTAACCGATGGCATGAAACTTTATGACTTATGTGGCACACCTGGGTATCTTGCACCCGA
AACTCTTAAATGTAACATGTTCGAAGACGCACCAGGCTATTCAAAAGAAGTCGATATGTG
GGCATGTGGTGTTATTATGTTCACACTTCTTGTCGGTTGCCCTCCATTCTGGCATCGAAA
GCAGATGATAATGCTGCGAAATATCATGGAAGGAAAGTACAGTTTTATGTCACCCGAGTG
GTCAGATATTTCAGAAAATGTCTTGTGGTTGATCCCGAGAAGCGTATAACTGTTCGCGAA
GCTTTGAAGCATCCATTCTTTAACACTGTACTTTTTGATCAAGACATCGCACCACTAAAG
CGATCTTTATCGGCGAAAACCAGAAGATATAGCCGTATCCATGATTTAGCTTTGATGCGT
CGTCAAAGTCAATTTAATGCTAGGAAGAAATTTCAATTTGCTATACTATGCGTACGAGCT
ATGATAAGAATACAAAGATTGCGCTACACACCTGAACCGCTCGACATCGAAGAAGCCTTA
CGCGATCCATATCGTGTCAAAGTATTGCGTAAAGTCATCGATGCATGTGCTTTCCGCGTT
TACGGCCATTGGGTCAAGAAAGGCGAGGGACAGAATCGTGCTGCTCTCTTTGAAAACCAA
CCAAAAGTTGAACTTCATAACCTTTACATTCATCAGTTGCAAAAATAA

>g1841.t23 Gene=g1841 Length=270
MAKDEPDDDTLPDKDAAKGFYAKYEPKEVLGRGISSVVRRCIDKETGKEYAAKIIDLGAS
DVNDSHQMLEATRQEINILRQVMGHPYIIELQDVFESDAFIFLVFELCRHGELFDYLTSV
VTLSEKKTRYIMRQIFEGVDYIHSRNIVHRDLKPENILLDDNLNVKITDFGFARHLTDGM
KLYDLCGTPGYLAPETLKCNMFEDAPGYSKEVDMWACGVIMFTLLVGCPPFWHRKQMIML
RNIMEGKYSFMSPEWSDISENVLWLIPRSV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1841.t23 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 6 107 1.9E-34
6 g1841.t23 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 108 270 1.5E-61
2 g1841.t23 PANTHER PTHR44167 OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 1 268 2.1E-158
3 g1841.t23 PANTHER PTHR44167:SF7 PHOSPHORYLASE KINASE CATALYTIC SUBUNIT GAMMA 1 1 268 2.1E-158
1 g1841.t23 Pfam PF00069 Protein kinase domain 24 266 5.7E-69
8 g1841.t23 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 211 -
9 g1841.t23 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 212 232 -
7 g1841.t23 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 233 270 -
11 g1841.t23 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 30 53 -
10 g1841.t23 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 147 159 -
13 g1841.t23 ProSiteProfiles PS50011 Protein kinase domain profile. 24 270 46.789
12 g1841.t23 SMART SM00220 serkin_6 24 265 7.4E-82
4 g1841.t23 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 20 266 1.89E-78

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed