Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1841 g1841.t5 TTS g1841.t5 13254002 13254002
chr_3 g1841 g1841.t5 isoform g1841.t5 13254268 13258835
chr_3 g1841 g1841.t5 exon g1841.t5.exon1 13254268 13254402
chr_3 g1841 g1841.t5 cds g1841.t5.CDS1 13254323 13254402
chr_3 g1841 g1841.t5 exon g1841.t5.exon2 13254480 13254633
chr_3 g1841 g1841.t5 cds g1841.t5.CDS2 13254480 13254633
chr_3 g1841 g1841.t5 exon g1841.t5.exon3 13257131 13257304
chr_3 g1841 g1841.t5 exon g1841.t5.exon4 13258760 13258835
chr_3 g1841 g1841.t5 TSS g1841.t5 NA NA

Sequences

>g1841.t5 Gene=g1841 Length=539
AAAATGTCTTGTGGTTGATCCCGAGAAGCGTATAACTGTTCGCGAAGCTTTGAAGCATCC
ATTCTTTAACACTGTAAATAAGAATAAGGAGATAGCAAGTAAGGCAACAACGACAACGTC
TGATAATGAACAGACTAGTATTAATTTAAGTAATGAGACTGAGAGTATTAAAAAACAGGA
ACCGAAGAAACAAGTCAATATTGTTATATCATATATTGAACAGAATGACGAGCAAGGAAT
TGGAAAATCGATGCGTCGTCAAAGTCAATTTAATGCTAGGAAGAAATTTCAATTTGCTAT
ACTATGCGTACGAGCTATGATAAGAATACAAAGATTGCGCTACACACCTGAACCGCTCGA
CATCGAAGAAGCCTTACGCGATCCATATCGTGTCAAAGTATTGCGTCATCGATGCATGTG
CTTTCCGCGTTTACGGCCATTGGGTCAAGAAAGGCGAGGGACAGAATCGTGCTGCTCTCT
TTGAAAACCAACCAAAAGTTGAACTTCATAACCTTTACATTCATCAGTTGCAAAAATAA

>g1841.t5 Gene=g1841 Length=77
MRRQSQFNARKKFQFAILCVRAMIRIQRLRYTPEPLDIEEALRDPYRVKVLRHRCMCFPR
LRPLGQERRGTESCCSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g1841.t5 PRINTS PR01049 Phosphorylase kinase family signature 5 20 2e-07
3 g1841.t5 PRINTS PR01049 Phosphorylase kinase family signature 21 39 2e-07
1 g1841.t5 PRINTS PR01049 Phosphorylase kinase family signature 40 54 2e-07

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005978 glycogen biosynthetic process BP
GO:0005524 ATP binding MF
GO:0004689 phosphorylase kinase activity MF
GO:0006468 protein phosphorylation BP
GO:0005516 calmodulin binding MF
GO:0005964 phosphorylase kinase complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed