General information for g1841.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform.
Parent gene
- The parent gene g1841 is located on chr_3: 13260701..13261369 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1841 | g1841.t6 | TTS | g1841.t6 | 13254002 | 13254002 |
| chr_3 | g1841 | g1841.t6 | isoform | g1841.t6 | 13254268 | 13258859 |
| chr_3 | g1841 | g1841.t6 | exon | g1841.t6.exon1 | 13254268 | 13254402 |
| chr_3 | g1841 | g1841.t6 | cds | g1841.t6.CDS1 | 13254268 | 13254402 |
| chr_3 | g1841 | g1841.t6 | exon | g1841.t6.exon2 | 13254475 | 13254633 |
| chr_3 | g1841 | g1841.t6 | cds | g1841.t6.CDS2 | 13254475 | 13254633 |
| chr_3 | g1841 | g1841.t6 | exon | g1841.t6.exon3 | 13257131 | 13257304 |
| chr_3 | g1841 | g1841.t6 | exon | g1841.t6.exon4 | 13258760 | 13258859 |
| chr_3 | g1841 | g1841.t6 | TSS | g1841.t6 | NA | NA |
Sequences
>g1841.t6 Gene=g1841 Length=568
AGAGGATCCAAAAGATCTGATAAGAAAATGTCTTGTGGTTGATCCCGAGAAGCGTATAAC
TGTTCGCGAAGCTTTGAAGCATCCATTCTTTAACACTGTAAATAAGAATAAGGAGATAGC
AAGTAAGGCAACAACGACAACGTCTGATAATGAACAGACTAGTATTAATTTAAGTAATGA
GACTGAGAGTATTAAAAAACAGGAACCGAAGAAACAAGTCAATATTGTTATATCATATAT
TGAACAGAATGACGAGCAAGGAATTGGAAAATCGATGCGTCGTCAAAGTCAATTTAATGC
TAGGAAGAAATTTCAATTTGCTATACTATGCGTACGAGCTATGATAAGAATACAAAGATT
GCGCTACACACCTGAACCGCTCGACATCGAAGAAGCCTTACGCGATCCATATCGTGTCAA
AGTATTGCGTAAAGTCATCGATGCATGTGCTTTCCGCGTTTACGGCCATTGGGTCAAGAA
AGGCGAGGGACAGAATCGTGCTGCTCTCTTTGAAAACCAACCAAAAGTTGAACTTCATAA
CCTTTACATTCATCAGTTGCAAAAATAA
>g1841.t6 Gene=g1841 Length=97
MRRQSQFNARKKFQFAILCVRAMIRIQRLRYTPEPLDIEEALRDPYRVKVLRKVIDACAF
RVYGHWVKKGEGQNRAALFENQPKVELHNLYIHQLQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g1841.t6 | PANTHER | PTHR44167 | OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED | 3 | 94 | 0 |
| 2 | g1841.t6 | PANTHER | PTHR44167:SF7 | PHOSPHORYLASE KINASE CATALYTIC SUBUNIT GAMMA 1 | 3 | 94 | 0 |
| 5 | g1841.t6 | PRINTS | PR01049 | Phosphorylase kinase family signature | 5 | 20 | 0 |
| 7 | g1841.t6 | PRINTS | PR01049 | Phosphorylase kinase family signature | 21 | 39 | 0 |
| 4 | g1841.t6 | PRINTS | PR01049 | Phosphorylase kinase family signature | 40 | 54 | 0 |
| 3 | g1841.t6 | PRINTS | PR01049 | Phosphorylase kinase family signature | 55 | 70 | 0 |
| 6 | g1841.t6 | PRINTS | PR01049 | Phosphorylase kinase family signature | 71 | 84 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005978 | glycogen biosynthetic process | BP |
| GO:0005524 | ATP binding | MF |
| GO:0004689 | phosphorylase kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
| GO:0005516 | calmodulin binding | MF |
| GO:0005964 | phosphorylase kinase complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
