Gene loci information

Transcript annotation

  • This transcript has been annotated as Filamin-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1856 g1856.t1 isoform g1856.t1 13374589 13403608
chr_3 g1856 g1856.t1 exon g1856.t1.exon1 13374589 13374703
chr_3 g1856 g1856.t1 cds g1856.t1.CDS1 13374589 13374703
chr_3 g1856 g1856.t1 exon g1856.t1.exon2 13374791 13374837
chr_3 g1856 g1856.t1 cds g1856.t1.CDS2 13374791 13374837
chr_3 g1856 g1856.t1 exon g1856.t1.exon3 13374889 13374937
chr_3 g1856 g1856.t1 cds g1856.t1.CDS3 13374889 13374937
chr_3 g1856 g1856.t1 exon g1856.t1.exon4 13375056 13375502
chr_3 g1856 g1856.t1 cds g1856.t1.CDS4 13375056 13375502
chr_3 g1856 g1856.t1 exon g1856.t1.exon5 13375774 13376340
chr_3 g1856 g1856.t1 cds g1856.t1.CDS5 13375774 13376340
chr_3 g1856 g1856.t1 exon g1856.t1.exon6 13376807 13377319
chr_3 g1856 g1856.t1 cds g1856.t1.CDS6 13376807 13377319
chr_3 g1856 g1856.t1 exon g1856.t1.exon7 13377485 13378046
chr_3 g1856 g1856.t1 cds g1856.t1.CDS7 13377485 13378046
chr_3 g1856 g1856.t1 exon g1856.t1.exon8 13378110 13378316
chr_3 g1856 g1856.t1 cds g1856.t1.CDS8 13378110 13378316
chr_3 g1856 g1856.t1 exon g1856.t1.exon9 13378381 13378513
chr_3 g1856 g1856.t1 cds g1856.t1.CDS9 13378381 13378513
chr_3 g1856 g1856.t1 exon g1856.t1.exon10 13385004 13385144
chr_3 g1856 g1856.t1 cds g1856.t1.CDS10 13385004 13385144
chr_3 g1856 g1856.t1 exon g1856.t1.exon11 13385204 13385462
chr_3 g1856 g1856.t1 cds g1856.t1.CDS11 13385204 13385462
chr_3 g1856 g1856.t1 exon g1856.t1.exon12 13400668 13400808
chr_3 g1856 g1856.t1 cds g1856.t1.CDS12 13400668 13400808
chr_3 g1856 g1856.t1 exon g1856.t1.exon13 13400878 13401047
chr_3 g1856 g1856.t1 cds g1856.t1.CDS13 13400878 13401047
chr_3 g1856 g1856.t1 exon g1856.t1.exon14 13401120 13401245
chr_3 g1856 g1856.t1 cds g1856.t1.CDS14 13401120 13401245
chr_3 g1856 g1856.t1 exon g1856.t1.exon15 13401323 13401436
chr_3 g1856 g1856.t1 cds g1856.t1.CDS15 13401323 13401436
chr_3 g1856 g1856.t1 exon g1856.t1.exon16 13401499 13402207
chr_3 g1856 g1856.t1 cds g1856.t1.CDS16 13401499 13402207
chr_3 g1856 g1856.t1 exon g1856.t1.exon17 13402283 13403365
chr_3 g1856 g1856.t1 cds g1856.t1.CDS17 13402283 13403365
chr_3 g1856 g1856.t1 exon g1856.t1.exon18 13403424 13403608
chr_3 g1856 g1856.t1 cds g1856.t1.CDS18 13403424 13403608
chr_3 g1856 g1856.t1 TTS g1856.t1 13404143 13404143
chr_3 g1856 g1856.t1 TSS g1856.t1 NA NA

Sequences

>g1856.t1 Gene=g1856 Length=5568
ATGGAAAGTTTTAAAATAAAAACCTGGGTAAAAGTACCATCCTATGAAGAAATTAAATTA
CAAGTTGAACAATGGAATCAAATCAATAATCCTGAAATGAAACCTGTAAAAGGAGGAAAT
AATGAAGAAGTTGCATTTGAAATAGAAAGATTAACTATTGAGGTTTTAAAGGAATTAGGC
ATATATGCGAATTCGACAAACGATGTTGGAGAAGGATGGCTTAAGCACACAAAAGCACAC
GACATATATGAGCAAACAGCAATTTTAAATCGCTCATTAAGGGATCATGGTTTGGAGGAA
GTTGCTAATAACAGTTTGAATCCAATACCCTTTAACCACAATTTAAAATGGATGGATCAA
GACGTGCTGACGTTTCCCTCCAGTTTAGTTTGCAGTATTTGTGGAGTTAATAGTACGAAC
GCGAGCAACTTTGATAGCCACACGAGAATGCATCAACGACAAGTCGAAAATAGTCTTGAC
AATCGGCCATATAGCTGCAAATATAATTGTGGCAAGAGCTTCGCATCAGCATCGGGTGCT
TATAAACATGCGAGAGATAACTTTCGTTTTCGCCCTAACAAATCACAAAAAGTTACTTGT
CCCAAATGTGGTGCAAAGGTGTTGAATTTAAAGAGACATCTAAAGTGTTCAACAAAAACT
GCGGCTGTAAATAGTTTACAACAATTTCGCATAATTACAAATGATTTAAAAGCAGCAGAC
TTACAAGTAACAATAACAAGTCCATCCGGAAATAGACTAAAAGCACATATTATCAATACT
GAAGATGGATTTTTGGTGAATTTTACACCGACACAAGTTGGACAGTATTTACTCTTCATC
ACATTCGCTGGAATTCCTTTGTTAACAGAACCATATGTTTTGCACTGTCTCAAGGAAAGT
GATCCCAAGAAAGTATTTGCAGTTGGTCCAGGCCTTCATTCAGGAATAGTAAATAAACCT
GCAGAATTTGTGATAGATACTCGAGCTGCTGGACAAGGAGCATTAGGTGTCACCATAGAA
GGACCGGTAGAATGTCATCTGAAATGCCGTGATAATGGAGATGGAACGTGTAATATTGTT
TATTGGCCTACTGTATGCGGTCATTATTCCGTAAATATTACTTTTAATGATTATCACATA
ATTCAATCACCATTTCAAGTTATGATTTGGCCTATGCCAAATTTAGAACGCGTCTCAGTA
TCAGGGGCGGGTATAGAGATGCACGGCGTCGTTATGAATGCTCAAACTGATTTCCAAGTC
GACATGAAAAAGTTAGGTCACAAAATTGATACAAGTAAATTAACTTGCTCAATCACTGCC
CCAAGCGGTAAACCTGTGCCAAACAAGATTATTTCACAAAATGAAGCCTTCCGAATTCTA
TACACACCATTCGAAGCTGGAAGACATACAATTGAATTGAATTATGATAATGTCCCAGTT
CCAGGCTCGCCATTTGTCATTCATGTCAAGAGCGGTTGTGATCCTACTCGATGCAAAGTT
TATGGTGAAGGACTTAAAGGTGGTTTTGTTAATAAAAAATGCAAATTCACGGTGTCAACT
CGTGAAGCAGGCGTTGGTGGACTTTCATTTGCAATTGAAGGACCATCTGAAGCAAAAATG
TCTTGCATTGATAATCGTGATGGCTCTTGCGACGTTGAATTTACACCTACTGAACCTGGT
GTTTACGACATTTCTGTTCGTTTTGCTGAAGTCGAAATTCCTGGATCTCCATTCCAAGTG
AAAATCGATGGACCACATGCACAACAAGTATCAACCGGTGACTATCGCAGTGTAAAATTG
TACGGACCTGCTGTTGAGACACTTCAAGTTTATGAAGGAATTCCAGCAAGTTTTTATATC
AATGTTGCTGATGCTGGTGCAGGATTAATTGGCGTTGAAATGACATCAAGTGAAGGAGGT
GCAGTTGAAAATTATGAAGTTGAAGAGCGTGGTGATGGAAACTATTTAGTGACATTTATT
CCACCAAAACAAAACACCACAATTACCGCAAAGGTTTCATTCGCTAAGCATAATGTTCCT
AATTCCCCGTTCGTTATGCGTGTCTTGCCACCAGTTGCAATTAAATCTGGCAATTTGGTA
CTTTCTGGTGACATTTCAAAGAAAACGCTTTCTGCTTCAGTTCCAGCAAACTTCCAAATT
GACACAGGAAAAGCTGGTATGGGTGAGATCAAAGTTGTTATCAATGGTCCACAAGGAAAA
CCAATGGTTCCAAGAATTGAACGTGGCAAAGATGGAAAATACTCTGTTAGTTTTGTTCCT
GATGAATTGGGTCCATACAACGTTTCAGTTATGTATGCTGGAAAGGAAATCGAAAATTCG
CCATTTGTGATGCAATCTACACCATCTGGTGATGCAAATAAATGCAAATTTGTTAATAAT
GCAGCAGAAAAGGTTATTTTTGGCAAGAAAAATCGTTTAACAGTCGATGCACGTGAAGCT
GGAACTGGTAATGTTACATGCAAAATTGTAAAATCATCTAATGGACAAATCATAGATACA
GAAATTGTTGAAAAAGATGGATTTTTTGATATCTTTTATTTACTTGCTGAGCCTGGAACA
TACGATGTTGATGTGAAATTTGGTGGAAAACAAGTGCCTAATGGATTAATGAGAATGACG
GCTGTTGAAAATCTTTCATCAAGTGAAGAAGAAGTGAGAACAATAGAAAAGCACACAAAA
GTCAACTATTCAGAGTACATTGAATCATCTGTTAAGGAAACTAAAGAATTCCATCAAGTT
TCATCTTTAGACCAATTTTTGGATACTGAACGAGCACATTCTAATCAATTTAATACCAGT
TCAAACGGTGTTCCAAAGAGTAACGGCCATTATCAAGATCATCTTAAAAGTTATTTGAAC
GGGAAAAAAGAAGAAGTAGATTTTTCAGAAGAGTCCATACATAAAAGAACAGTTCTTAGT
CATCAACAACAAGTTAAAGAAGGCCAAAGTTACCGTACTATTTCTCTTGATAAAATTGTA
GTGTCAAATTCAGTTGGTGCCACAAGTCATTCACTCGAAGCTGACATAAAAATGCCGAGC
GGACAAATTGATAAACCAATTATTGAGGATAATCGTGATGGAACTGTTTCCGTTCGTTAT
GATCCACGTGAGGAAGGTACACATGAGTTAGCATTAAAATACAATGGTGAACATGTCCAA
GGATCACCATTTAAATTTCATGTTGATTCTATTTCTTCTGGTTATGTAACTGCTTATGGT
CCTGGTTTAACTCATGGTGTGACAGGAGAGCCAGCTGTTTTTACTATTTCAACGAAAGGT
GCTGGCGCTGGTGGACTTTCGATGGCAGTTGAAGGCCCTAGCAAAGCTGAGATAAGCTAC
AAAGACAACAAGGACGGAACAGTTTCTGTGAATTATTTGCCAACAGCTCCAGGCGAATAC
AAAATCTCTGTTCGTTTCGGAGATAAAAACATCAAAGGTTCACCATTTTTTGCAAAGGTC
ACTGGTGAAGGTCGTAAACGTAATCAAATTTCGGTTGGATCATGCTCTGAAGTTACTTTT
CCTGGAAAAATTTCGGACAATGATCTTCGTTCACTTAATGCTTCTATTCAAGCACCATCA
GGTTTAGAAGAGCCATGCTTCTTGAAACGCATGCCATCAGGAAACATTGGTATTTCATTT
ACGCCACGTGAATCAGGAGAACATATTGTTTCCGTTAAACGCTTAGGAAAGCATATCAAT
AACTCGCCATTCAAAGTTAATGTTGCTGAACGCGAGGTTGGTGATGCGAAGAAAGTTAAA
GTTTCGGGTTTTGCATTGAAAGAGGGCAAGACACATACTGAAAATTACTTTTCAGTTGAT
ACGCGTAACGCTGGATATGGTGGTCTTTCATTGTCAATTGAAGGTCCAAGTAAAGCTGAA
ATTGTTTGTCAAGATAAAGAGGATGGTACATTGAATATTTCTTATAAACCAACTGAACCT
GGTTATTACATCATCAATTTGAAATTTGCTGATCATCATGTTGAAGGTTCGCCTTATACT
GTCAAAGTTTCAGGAGATGGAACTAATAGAAAGCGTGAAAAAATTCAACGTCAACGCGAT
CCAGTTCCAGTTACTGAAGTCGGTAGTCAATGCAAATTGACATTTAAACTACCAGGAATC
ACTTCCTTTGATTTGTCCGCACAAGTTACATCACCTGGAAATGTCACCGAGGATGCAGAA
ATGCAAGAGATTGAAGATGGTCTCTATTCAGTCTTTTTCGTGCCAAAAGAACTTGGAATT
CATACTGTTTCTGTTCGCTATAAGGACATGCATATTCCTGGAAGTCCTTTCCAATTTACT
GTTGGACCATTGCGCGATACTGGTGCACATTTGGTTAAAGCGGGCGGTCCTGGCTTAGAT
CATGGCGAAGTTGGTCAACCAAATGAATTCAATGTTTGGACTCGTGAAGCTGGTGGTGGT
ACGTTGGCGATTTCTGTTGAAGGTCCAAGCAAGGCCGAGATTGATTTTAGAGATCGTAAA
GATGGATCTTGTGACGTCTCTTATATTGTATCAGAACCAGGAGATTATCGTGTTGGCATG
AAATTTAATGATCGCCATATACCTGATTCTCCATTCAAAGTTTTCATTCAACCATCAATG
ATTGAAGCTCACAAGCTTGAAGTCGCACAATTTCCTGATGGTCCCGTTCAGCCAGATAAA
CCAGCTCAATTTATTGTTCGTAAAAATGGTGCTGTAGGAAATTTAGATGCAAAAGTAGTT
GCACCATCAAATACAGAAGATGATTGCTTCATTCAATTGATGGATCCTGACAATTACTCT
GTTCGTTTCTATCCTCGCGAAAATGGCATTCATGCTATTCATACAAAATTCAATGGTGTT
CACATCAACGGAAGTCCTTTCCGTATTAAGGTAGGCAAAGATGATGCTGATCCAGCTGCT
GTTCATGCAAGTGGTGATGGTCTTCATGAAGGTAAAACTGGTCAAAAGATGGACTTTATC
ATCGACACATGCAATGCTGGTTGCGGTTTACTATCTGTAACAATGGATGGACCTTCAAAA
GTTTCAATGGATTGTACAGAAGTTGAAGAGGGTTACAAAGTCCGTTATACTCCTCTCCTT
CCTGGTGACTACTATTGCACTGTTAAATACAATCACATGCACATCGTAGGATCACCTTTC
AAAATTGTTGTCGATGGCGAAAAACTTGCAGATGGTGGTGGTCAAGAAACTACAACTGTC
AACGTCGACACAGTTGTAAAAATTGCAAAGGGTGGCAAAAACATTGGCCCAGTCATGCCT
CACTTCAATTCAGATGCATCTAAAGTCATTGCTAAGGGATTGGCACTTAAGAAGGCATAT
CTTGGTAAACAAAACTCATTCACAATTAATTGTGGTAATGCAGGTAACAATATCCTTTAT
GTTGGAATGTATGGTCCAAAAGGTCCCTGCGAAGAATGCTTCATTAAACATACTGGACGT
AATAACTACAATGTCAATTATTTAGTGCGTGAAAGAGGCGATTATATTTTAATCATCAAA
TGGGGCGATGATCACATCCCTGGAAGCCCTTATCGCGTAGAATGCTAG

>g1856.t1 Gene=g1856 Length=1855
MESFKIKTWVKVPSYEEIKLQVEQWNQINNPEMKPVKGGNNEEVAFEIERLTIEVLKELG
IYANSTNDVGEGWLKHTKAHDIYEQTAILNRSLRDHGLEEVANNSLNPIPFNHNLKWMDQ
DVLTFPSSLVCSICGVNSTNASNFDSHTRMHQRQVENSLDNRPYSCKYNCGKSFASASGA
YKHARDNFRFRPNKSQKVTCPKCGAKVLNLKRHLKCSTKTAAVNSLQQFRIITNDLKAAD
LQVTITSPSGNRLKAHIINTEDGFLVNFTPTQVGQYLLFITFAGIPLLTEPYVLHCLKES
DPKKVFAVGPGLHSGIVNKPAEFVIDTRAAGQGALGVTIEGPVECHLKCRDNGDGTCNIV
YWPTVCGHYSVNITFNDYHIIQSPFQVMIWPMPNLERVSVSGAGIEMHGVVMNAQTDFQV
DMKKLGHKIDTSKLTCSITAPSGKPVPNKIISQNEAFRILYTPFEAGRHTIELNYDNVPV
PGSPFVIHVKSGCDPTRCKVYGEGLKGGFVNKKCKFTVSTREAGVGGLSFAIEGPSEAKM
SCIDNRDGSCDVEFTPTEPGVYDISVRFAEVEIPGSPFQVKIDGPHAQQVSTGDYRSVKL
YGPAVETLQVYEGIPASFYINVADAGAGLIGVEMTSSEGGAVENYEVEERGDGNYLVTFI
PPKQNTTITAKVSFAKHNVPNSPFVMRVLPPVAIKSGNLVLSGDISKKTLSASVPANFQI
DTGKAGMGEIKVVINGPQGKPMVPRIERGKDGKYSVSFVPDELGPYNVSVMYAGKEIENS
PFVMQSTPSGDANKCKFVNNAAEKVIFGKKNRLTVDAREAGTGNVTCKIVKSSNGQIIDT
EIVEKDGFFDIFYLLAEPGTYDVDVKFGGKQVPNGLMRMTAVENLSSSEEEVRTIEKHTK
VNYSEYIESSVKETKEFHQVSSLDQFLDTERAHSNQFNTSSNGVPKSNGHYQDHLKSYLN
GKKEEVDFSEESIHKRTVLSHQQQVKEGQSYRTISLDKIVVSNSVGATSHSLEADIKMPS
GQIDKPIIEDNRDGTVSVRYDPREEGTHELALKYNGEHVQGSPFKFHVDSISSGYVTAYG
PGLTHGVTGEPAVFTISTKGAGAGGLSMAVEGPSKAEISYKDNKDGTVSVNYLPTAPGEY
KISVRFGDKNIKGSPFFAKVTGEGRKRNQISVGSCSEVTFPGKISDNDLRSLNASIQAPS
GLEEPCFLKRMPSGNIGISFTPRESGEHIVSVKRLGKHINNSPFKVNVAEREVGDAKKVK
VSGFALKEGKTHTENYFSVDTRNAGYGGLSLSIEGPSKAEIVCQDKEDGTLNISYKPTEP
GYYIINLKFADHHVEGSPYTVKVSGDGTNRKREKIQRQRDPVPVTEVGSQCKLTFKLPGI
TSFDLSAQVTSPGNVTEDAEMQEIEDGLYSVFFVPKELGIHTVSVRYKDMHIPGSPFQFT
VGPLRDTGAHLVKAGGPGLDHGEVGQPNEFNVWTREAGGGTLAISVEGPSKAEIDFRDRK
DGSCDVSYIVSEPGDYRVGMKFNDRHIPDSPFKVFIQPSMIEAHKLEVAQFPDGPVQPDK
PAQFIVRKNGAVGNLDAKVVAPSNTEDDCFIQLMDPDNYSVRFYPRENGIHAIHTKFNGV
HINGSPFRIKVGKDDADPAAVHASGDGLHEGKTGQKMDFIIDTCNAGCGLLSVTMDGPSK
VSMDCTEVEEGYKVRYTPLLPGDYYCTVKYNHMHIVGSPFKIVVDGEKLADGGGQETTTV
NVDTVVKIAKGGKNIGPVMPHFNSDASKVIAKGLALKKAYLGKQNSFTINCGNAGNNILY
VGMYGPKGPCEECFIKHTGRNNYNVNYLVRERGDYILIIKWGDDHIPGSPYRVEC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
49 g1856.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 127 191 0.0000000
58 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 216 293 0.0000000
64 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 294 394 0.0000000
52 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 395 491 0.0000000
62 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 492 590 0.0000000
54 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 591 696 0.0000000
55 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 697 786 0.0000000
53 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 787 901 0.0000000
51 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 997 1070 0.0000000
63 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1071 1173 0.0000000
57 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1179 1251 0.0000000
60 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1252 1356 0.0000000
59 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1362 1440 0.0000000
61 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1441 1550 0.0000000
65 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1560 1632 0.0000000
56 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1633 1731 0.0000000
50 g1856.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1759 1855 0.0000000
14 g1856.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 219 1854 0.0000000
15 g1856.t1 PANTHER PTHR38537:SF10 FILAMIN-C 219 1854 0.0000000
8 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 300 385 0.0000000
5 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 396 485 0.0000000
9 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 493 579 0.0000000
12 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 594 684 0.0000001
1 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 711 782 0.0000000
2 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 790 874 0.0000001
10 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1010 1065 0.0000000
4 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1075 1156 0.0000000
7 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1254 1340 0.0000000
13 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1369 1438 0.0000019
6 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1449 1533 0.0000000
11 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1636 1721 0.0000000
3 g1856.t1 Pfam PF00630 Filamin/ABP280 repeat 1764 1852 0.0000000
67 g1856.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 129 156 8.6210000
66 g1856.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 164 192 10.7620000
75 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 221 296 16.0000000
76 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 297 389 30.5270000
79 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 390 489 23.8900000
68 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 490 582 31.8630000
83 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 590 688 18.7330000
74 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 691 786 24.6510000
77 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 787 881 17.1710000
73 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 998 1068 20.5610000
72 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1068 1160 31.1640000
71 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1158 1248 21.6710000
70 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1251 1343 30.4250000
78 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1341 1441 22.6980000
80 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1444 1536 29.9310000
69 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1559 1631 20.2530000
81 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1633 1724 26.4380000
82 g1856.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1761 1855 26.1710000
47 g1856.t1 SMART SM00557 flmn_3 210 299 0.0001000
34 g1856.t1 SMART SM00557 flmn_3 301 392 0.0000000
42 g1856.t1 SMART SM00557 flmn_3 394 492 0.0000000
46 g1856.t1 SMART SM00557 flmn_3 494 585 0.0000000
35 g1856.t1 SMART SM00557 flmn_3 594 691 0.0000000
33 g1856.t1 SMART SM00557 flmn_3 695 789 0.0000000
48 g1856.t1 SMART SM00557 flmn_3 791 884 0.0000000
38 g1856.t1 SMART SM00557 flmn_3 995 1071 0.0000000
41 g1856.t1 SMART SM00557 flmn_3 1072 1163 0.0000000
44 g1856.t1 SMART SM00557 flmn_3 1166 1251 0.0000000
45 g1856.t1 SMART SM00557 flmn_3 1255 1346 0.0000000
43 g1856.t1 SMART SM00557 flmn_3 1351 1444 0.0000000
37 g1856.t1 SMART SM00557 flmn_3 1448 1539 0.0000000
36 g1856.t1 SMART SM00557 flmn_3 1542 1634 0.0000000
40 g1856.t1 SMART SM00557 flmn_3 1637 1727 0.0000000
39 g1856.t1 SMART SM00557 flmn_3 1765 1855 0.0000000
32 g1856.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 130 185 0.0000221
28 g1856.t1 SUPERFAMILY SSF81296 E set domains 218 301 0.0000000
30 g1856.t1 SUPERFAMILY SSF81296 E set domains 280 393 0.0000000
16 g1856.t1 SUPERFAMILY SSF81296 E set domains 383 493 0.0000000
18 g1856.t1 SUPERFAMILY SSF81296 E set domains 473 585 0.0000000
25 g1856.t1 SUPERFAMILY SSF81296 E set domains 591 692 0.0000000
17 g1856.t1 SUPERFAMILY SSF81296 E set domains 708 798 0.0000000
26 g1856.t1 SUPERFAMILY SSF81296 E set domains 769 883 0.0000000
27 g1856.t1 SUPERFAMILY SSF81296 E set domains 1005 1085 0.0000000
23 g1856.t1 SUPERFAMILY SSF81296 E set domains 1072 1163 0.0000000
20 g1856.t1 SUPERFAMILY SSF81296 E set domains 1151 1250 0.0000000
22 g1856.t1 SUPERFAMILY SSF81296 E set domains 1252 1346 0.0000000
19 g1856.t1 SUPERFAMILY SSF81296 E set domains 1367 1461 0.0000000
21 g1856.t1 SUPERFAMILY SSF81296 E set domains 1447 1539 0.0000000
31 g1856.t1 SUPERFAMILY SSF81296 E set domains 1554 1632 0.0000000
29 g1856.t1 SUPERFAMILY SSF81296 E set domains 1637 1726 0.0000000
24 g1856.t1 SUPERFAMILY SSF81296 E set domains 1765 1854 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed