General information for g1858.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1858 is located on chr_3: 13456758..13459140 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1858 | g1858.t5 | isoform | g1858.t5 | 13423863 | 13434668 |
| chr_3 | g1858 | g1858.t5 | exon | g1858.t5.exon1 | 13423863 | 13424529 |
| chr_3 | g1858 | g1858.t5 | cds | g1858.t5.CDS1 | 13424456 | 13424529 |
| chr_3 | g1858 | g1858.t5 | exon | g1858.t5.exon2 | 13426552 | 13426612 |
| chr_3 | g1858 | g1858.t5 | cds | g1858.t5.CDS2 | 13426552 | 13426612 |
| chr_3 | g1858 | g1858.t5 | exon | g1858.t5.exon3 | 13434490 | 13434668 |
| chr_3 | g1858 | g1858.t5 | cds | g1858.t5.CDS3 | 13434490 | 13434549 |
| chr_3 | g1858 | g1858.t5 | TSS | g1858.t5 | NA | NA |
| chr_3 | g1858 | g1858.t5 | TTS | g1858.t5 | NA | NA |
Sequences
>g1858.t5 Gene=g1858 Length=907
GAGCTGTTGGTGGTGATGATCAGACTGATGAAGATAAGGAGAAGGCCGAGGAAGAAGAAA
GAGAGCGACTTGAAGCAATCCGAGAAGCTGAAGAGCGCCGAAAAGAGAAGCATCGCAAAA
TGGAAGAGGAACGTGAAAAGATGCGTCAAGAGATAAGAGACAAAGTGAGTAATAAATATA
AAAAGACGCCGGAAGAGTTGGCCGCTGAAGCTGAGGCTGAAGATCTTGACGATTTTACTA
AATTGAAAAATTCAATAGAAACACAAGTGAACGAATTAAAAACACAAATCGAAAGCAAAT
GTGTTATGCAGTGATATGTTAATTGTTATTCATTCATATTATAATATTTTTAACAATGAT
GATGAGATAAAATGTTCATTGAAAGAAAATAATAAATATTAATAATGAGTTTAATTCACA
TTAAAAAATATGCAAAAAAATTCACATAAAAAAAGAAGTTGATTGAATTATGAAAAGAAA
AAAAAGTAATGCAAAAAAAGAAAATAAAAAAATTCATTAGCAATTAAATTAATTGATTGA
GTAGAGTTGATTATTATATACACATATATGAGAATGATAAATAATATTATTAAAAAATTA
TTATATTTTCAAAAAAAGAAAAAAAAACAGAAATAATAATTGGTTGAGGAAATTTACATT
TACATTAATTCATAAGAGTGCATCTGTAGTTGAAACTAACAATGAAAAAAAAAATAAATT
AAATAAAAAGTTGAAAATTTGAAAAAACCACCAAAAACAAATTGAAAAAGTCTTGCTAAG
ATTGCTGAAAATGCAATGCTGCGTTTTACTCGTCCAGTAAACGATTCATTCGAAAAATTG
CCTTTTTCCTCGTTCGAAAATATTACTGGACGCGAGAGACAGAGGGAAAATGAAGATTGG
CGCTAGT
>g1858.t5 Gene=g1858 Length=64
MEEEREKMRQEIRDKVSNKYKKTPEELAAEAEAEDLDDFTKLKNSIETQVNELKTQIESK
CVMQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1858.t5 | Coils | Coil | Coil | 36 | 56 | - |
| 1 | g1858.t5 | Gene3D | G3DSA:1.20.5.580 | Single Helix bin | 1 | 18 | 1.5E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
