General information for g1896.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1896 is located on chr_3: 13735448..13739381 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1896 | g1896.t17 | TSS | g1896.t17 | 13734218 | 13734218 |
| chr_3 | g1896 | g1896.t17 | isoform | g1896.t17 | 13735198 | 13736268 |
| chr_3 | g1896 | g1896.t17 | exon | g1896.t17.exon1 | 13735198 | 13735345 |
| chr_3 | g1896 | g1896.t17 | exon | g1896.t17.exon2 | 13735410 | 13736268 |
| chr_3 | g1896 | g1896.t17 | cds | g1896.t17.CDS1 | 13735492 | 13735581 |
| chr_3 | g1896 | g1896.t17 | TTS | g1896.t17 | 13736528 | 13736528 |
Sequences
>g1896.t17 Gene=g1896 Length=1007
CTTCGACCACATCAACAACAAGTGTTTCTCCTCCAAATTCCGATAATACAACAACTACAA
GTACCACTACTTCAACCACCACAACAACAACACTTGCTCCTGTTCCAGATACTACAACCA
CTGCTCCAACTACATCCACGACACCAACTCCTCTTCCAACAACTACAAAGCCAACTCCTG
CACCAGACCATGATCGCTCGCAATTTTCAGTTACTGCTTTCATTGGAGGAATGGTGTTTG
CTTTTGGTATGATGGCAATTGGTTTCATTGCTTTTAAGTTCTACAAGGCTCGAAATGAGC
GTAATTATCACACTTTGTAAAGAGAGCTAATCGGAATGGATTACACAACACCTTAATCCA
TTTTCAATGTAAGAAGCCATTTATTAATCAATCTCAAGTGATTTTCCATCGAATATCTTA
CATATTTTCTTTTTAATCAAAACTTAATAATCTCGTAATGCTTTTTATATATTTAAATTC
TGTTTATTTTTTTAATTTGTCGTATGATAACGAGATTATCCTATTATTGAATTCTTTTAA
TATGTCACTATTTTCTAAACAGTTTATTCCTATCTAAAGAAATTACACTTACTTATCGAT
TAGATTTCTACGTAATATATCTCATTTACTTTATTTGATTGATGTTGCAATATAAGGCAG
AAGAAAAGCAGCTGAACATAAATTTTTCATATCATATAAAAATGTAATCTCAAAATTTAG
TAGGAAGAACAAGAATAAATATGTAAGTAATAAATACTATGCGTGTATGTAAAGATTATG
AAAACGATAGCTATAAAATTCTGAAATGCTAAACTATAAGTAATAAGGCAGGTTCTGTTT
CACCTAAGAAATAATCTGCTATTCAAAATTGATAGCTTACTTGTGAAAATTAAGATTTTG
CTATGGATAAGATATAATCGATGATTGTATGTGAAAAGATGCAATTAAAGCCATTAAATA
AATATTATCTCTAATAAACCAAGTCTGATTAAAAGATGGTAAAGAAA
>g1896.t17 Gene=g1896 Length=29
MVFAFGMMAIGFIAFKFYKARNERNYHTL
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
