General information for g1897.t42
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hexokinase-1.
Parent gene
- The parent gene g1897 is located on chr_3: 13737692..13738302 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1897 | g1897.t42 | TTS | g1897.t42 | 13736384 | 13736384 |
| chr_3 | g1897 | g1897.t42 | isoform | g1897.t42 | 13736735 | 13737619 |
| chr_3 | g1897 | g1897.t42 | exon | g1897.t42.exon1 | 13736735 | 13737619 |
| chr_3 | g1897 | g1897.t42 | cds | g1897.t42.CDS1 | 13736953 | 13737567 |
| chr_3 | g1897 | g1897.t42 | TSS | g1897.t42 | 13738426 | 13738426 |
Sequences
>g1897.t42 Gene=g1897 Length=885
GGATATTAAAATTTTAATTTGTGCTATACTTAATGATACAACCGGAACTCTCATGTCTTG
TGCATGGAAATATCAAGACTGTAAAATTGGAGTTATAATTGGAACCGGCTCTAATGCCTG
TTATGTAGAGAAGGTCAGATACGCAGAGTGGTTTGATAAACCCGGAAAATTTGACGATGA
AAGCGTGATCATCAATACAGAGTTTGGTGCATTCGGAGACAAAGGCAGTTTGGATGATAT
TCGAACATGTTTTGATATTGAAGTTGATAAAAATAGCATAAACCCGAGTAATCAATTGTT
TGAGAAAATGATTTCGGGAATGTATATGGGTGAACTTGTTAGATTGGTCATTGTGAAATT
AGCCTCAAAAGGTTTAATTTTCAATGGCAAAATTTCTAAGAAATTTATGCAACGAGAAAC
ATTTTTTACAAAATATATTTCTGAAATTGAGCATGAAGAAAATAATGTTTTTCATGCAAC
AAAAGAAATTTTGTATGAACTGGATATTGAAAATCCAACCGAAGAAGATTGTCGTATTGT
TCGATATTGTTGCGAATTGATAAGCAAGCGAGCAGCACAACTCGTTTCAAGTGGTTTAGC
AGTTCTTATGCTACGTATTGGTGATCCGAAGATCACTATCGGCGTTGATGGCTCTGTATA
TAGGTAAAAAAATTTATGAAAAAACAATTTTTTTTTTCCAAAAATATGTATTCAGCATTC
TCTGTTCCTTTTTTATGCTTAACAACTTGTAATAAAAGAGATTAAGTAAATTTTTTTCAA
TCATAACTGAACGTCATCGTCACATAACAGACAAAACTTAATACAAAAGAAAATTTAACC
TTATTAATATATGATTCATTTTTTAAAAAAAATCTTTCTAAATAA
>g1897.t42 Gene=g1897 Length=204
MSCAWKYQDCKIGVIIGTGSNACYVEKVRYAEWFDKPGKFDDESVIINTEFGAFGDKGSL
DDIRTCFDIEVDKNSINPSNQLFEKMISGMYMGELVRLVIVKLASKGLIFNGKISKKFMQ
RETFFTKYISEIEHEENNVFHATKEILYELDIENPTEEDCRIVRYCCELISKRAAQLVSS
GLAVLMLRIGDPKITIGVDGSVYR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1897.t42 | Gene3D | G3DSA:3.40.367.20 | - | 1 | 204 | 0.00 |
| 2 | g1897.t42 | PANTHER | PTHR19443:SF74 | PHOSPHOTRANSFERASE | 1 | 204 | 0.00 |
| 3 | g1897.t42 | PANTHER | PTHR19443 | HEXOKINASE | 1 | 204 | 0.00 |
| 5 | g1897.t42 | PRINTS | PR00475 | Hexokinase family signature | 12 | 26 | 0.00 |
| 4 | g1897.t42 | PRINTS | PR00475 | Hexokinase family signature | 81 | 103 | 0.00 |
| 6 | g1897.t42 | PRINTS | PR00475 | Hexokinase family signature | 163 | 185 | 0.00 |
| 1 | g1897.t42 | Pfam | PF03727 | Hexokinase | 11 | 204 | 0.00 |
| 9 | g1897.t42 | ProSiteProfiles | PS51748 | Hexokinase domain profile. | 1 | 204 | 23.31 |
| 7 | g1897.t42 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 9 | 204 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0001678 | cellular glucose homeostasis | BP |
| GO:0005524 | ATP binding | MF |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005536 | glucose binding | MF |
| GO:0004396 | hexokinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
