Gene loci information

Transcript annotation

  • This transcript has been annotated as Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1897 g1897.t43 TTS g1897.t43 13736384 13736384
chr_3 g1897 g1897.t43 isoform g1897.t43 13736967 13738302
chr_3 g1897 g1897.t43 exon g1897.t43.exon1 13736967 13737618
chr_3 g1897 g1897.t43 cds g1897.t43.CDS1 13736968 13737618
chr_3 g1897 g1897.t43 exon g1897.t43.exon2 13737693 13737787
chr_3 g1897 g1897.t43 cds g1897.t43.CDS2 13737693 13737787
chr_3 g1897 g1897.t43 exon g1897.t43.exon3 13737849 13738302
chr_3 g1897 g1897.t43 cds g1897.t43.CDS3 13737849 13738302
chr_3 g1897 g1897.t43 TSS g1897.t43 13738426 13738426

Sequences

>g1897.t43 Gene=g1897 Length=1201
ATGACAAACTCTATTCCACAAAAAGTGCATGACGCGATCGATAGAGATTTAGTACTAGAT
AACAAGAAATTAAATGATGTAATGGTAAAGTTTGAAAGAGAAATTAAAAAGGGTCTTTCA
AAGGCGCATCATGATGAATCGGAAGTAAAATGTTTTGTGACATATGTTCAAAATTTACCA
ATGGGAACTGAAAAGGGCAAATTTTTAGCTCTTGATTTGGGTGGCACGAATTTTCGTGTG
CTTCTTATTATTCTCAAGGGAGAAGAAGATTATGAATTTAAATCAAAAATTTTTGCTATC
CCTCAATCTTTAATGGTCGGCTCTGGTCGTGATTTATTTGATCATATTGCGCAATGTTTG
GCAGAATTCATAAAAGATATGAACATTCAAAATGAGATTTTGCCTCTCGGATTCACTTTT
AGTTTTCCCTGTCAACAAAAAGGACTAACCACTGGCACCCTCATTAAATGGACCAAAGGG
TTTAATTGTAGTGACGTTGTTGAGAAAAATGTAGTTGAGTTATTAGAAGAGGCAATTCAA
CGTCGTAATGATATTAAAATTTTAATTTGTGCTATACTTAATGATACAACCGGAACTCTC
ATGTCTTGTGCATGGAAATATCAAGACTGTAAAATTGGAGTTATAATTGGAACCGGCTCT
AATGCCTGTTATGTAGAGAAGGTCAGATACGCAGAGTGGTTTGATAAACCCGGAAAATTT
GACGATGAAAGCGTGATCATCAATACAGAGTTTGGTGCATTCGGAGACAAAGGCAGTTTG
GATGATATTCGAACATGTTTTGATATTGAAGTTGATAAAAATAGCATAAACCCGAGTAAT
CAATTGTTTGAGAAAATGATTTCGGGAATGTATATGGGTGAACTTGTTAGATTGGTCATT
GTGAAATTAGCCTCAAAAGGTTTAATTTTCAATGGCAAAATTTCTAAGAAATTTATGCAA
CGAGAAACATTTTTTACAAAATATATTTCTGAAATTGAGCATGAAGAAAATAATGTTTTT
CATGCAACAAAAGAAATTTTGTATGAACTGGATATTGAAAATCCAACCGAAGAAGATTGT
CGTATTGTTCGATATTGTTGCGAATTGATAAGCAAGCGAGCAGCACAACTCGTTTCAAGT
GGTTTAGCAGTTCTTATGCTACGTATTGGTGATCCGAAGATCACTATCGGCGTTGATGGC
T

>g1897.t43 Gene=g1897 Length=400
MTNSIPQKVHDAIDRDLVLDNKKLNDVMVKFEREIKKGLSKAHHDESEVKCFVTYVQNLP
MGTEKGKFLALDLGGTNFRVLLIILKGEEDYEFKSKIFAIPQSLMVGSGRDLFDHIAQCL
AEFIKDMNIQNEILPLGFTFSFPCQQKGLTTGTLIKWTKGFNCSDVVEKNVVELLEEAIQ
RRNDIKILICAILNDTTGTLMSCAWKYQDCKIGVIIGTGSNACYVEKVRYAEWFDKPGKF
DDESVIINTEFGAFGDKGSLDDIRTCFDIEVDKNSINPSNQLFEKMISGMYMGELVRLVI
VKLASKGLIFNGKISKKFMQRETFFTKYISEIEHEENNVFHATKEILYELDIENPTEEDC
RIVRYCCELISKRAAQLVSSGLAVLMLRIGDPKITIGVDG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g1897.t43 CDD cd00012 NBD_sugar-kinase_HSP70_actin 69 227 6.46295E-10
14 g1897.t43 Gene3D G3DSA:3.40.367.20 - 17 400 4.6E-147
13 g1897.t43 Gene3D G3DSA:3.30.420.40 - 54 205 4.6E-147
3 g1897.t43 PANTHER PTHR19443:SF4 HEXOKINASE-2 16 400 1.9E-147
4 g1897.t43 PANTHER PTHR19443 HEXOKINASE 16 400 1.9E-147
6 g1897.t43 PRINTS PR00475 Hexokinase family signature 69 85 2.1E-61
10 g1897.t43 PRINTS PR00475 Hexokinase family signature 136 161 2.1E-61
7 g1897.t43 PRINTS PR00475 Hexokinase family signature 189 205 2.1E-61
8 g1897.t43 PRINTS PR00475 Hexokinase family signature 212 226 2.1E-61
5 g1897.t43 PRINTS PR00475 Hexokinase family signature 281 303 2.1E-61
9 g1897.t43 PRINTS PR00475 Hexokinase family signature 363 385 2.1E-61
2 g1897.t43 Pfam PF00349 Hexokinase 12 205 4.6E-68
1 g1897.t43 Pfam PF03727 Hexokinase 211 400 1.4E-61
16 g1897.t43 ProSitePatterns PS00378 Hexokinase domain signature. 136 161 -
17 g1897.t43 ProSiteProfiles PS51748 Hexokinase domain profile. 4 400 44.998
11 g1897.t43 SUPERFAMILY SSF53067 Actin-like ATPase domain 8 206 9.72E-71
12 g1897.t43 SUPERFAMILY SSF53067 Actin-like ATPase domain 209 400 9.64E-60

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006096 glycolytic process BP
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed