Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Hexokinase type 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1897 g1897.t44 TTS g1897.t44 13736384 13736384
chr_3 g1897 g1897.t44 isoform g1897.t44 13737333 13738302
chr_3 g1897 g1897.t44 exon g1897.t44.exon1 13737333 13737588
chr_3 g1897 g1897.t44 exon g1897.t44.exon2 13737666 13738302
chr_3 g1897 g1897.t44 cds g1897.t44.CDS1 13737808 13738302
chr_3 g1897 g1897.t44 TSS g1897.t44 13738426 13738426

Sequences

>g1897.t44 Gene=g1897 Length=893
ATGACAAACTCTATTCCACAAAAAGTGCATGACGCGATCGATAGAGATTTAGTACTAGAT
AACAAGAAATTAAATGATGTAATGGTAAAGTTTGAAAGAGAAATTAAAAAGGGTCTTTCA
AAGGCGCATCATGATGAATCGGAAGTAAAATGTTTTGTGACATATGTTCAAAATTTACCA
ATGGGAACTGAAAAGGGCAAATTTTTAGCTCTTGATTTGGGTGGCACGAATTTTCGTGTG
CTTCTTATTATTCTCAAGGGAGAAGAAGATTATGAATTTAAATCAAAAATTTTTGCTATC
CCTCAATCTTTAATGGTCGGCTCTGGTCGTGATTTATTTGATCATATTGCGCAATGTTTG
GCAGAATTCATAAAAGATATGAACATTCAAAATGAGATTTTGCCTCTCGGATTCACTTTT
AGTTTTCCCTGTCAACAAAAAGGACTAACCACTGGTAAAATGTCTTACTTGCTACCATCT
TATGTGATTAACTAAAAAAATATTTAAATATAAAGGCACCCTCATTAAATGGACCAAAGG
GTTTAATTGTAGTGACGTTGTTGAGAAAAATGTAGTTGAGTTATTAGAAGAGGCAATTCA
ACGTCGTAATGTGAGTTTGTGACTTATGTGAATACCTAATGATACAACCGGAACTCTCAT
GTCTTGTGCATGGAAATATCAAGACTGTAAAATTGGAGTTATAATTGGAACCGGCTCTAA
TGCCTGTTATGTAGAGAAGGTCAGATACGCAGAGTGGTTTGATAAACCCGGAAAATTTGA
CGATGAAAGCGTGATCATCAATACAGAGTTTGGTGCATTCGGAGACAAAGGCAGTTTGGA
TGATATTCGAACATGTTTTGATATTGAAGTTGATAAAAATAGCATAAACCCGA

>g1897.t44 Gene=g1897 Length=164
MTNSIPQKVHDAIDRDLVLDNKKLNDVMVKFEREIKKGLSKAHHDESEVKCFVTYVQNLP
MGTEKGKFLALDLGGTNFRVLLIILKGEEDYEFKSKIFAIPQSLMVGSGRDLFDHIAQCL
AEFIKDMNIQNEILPLGFTFSFPCQQKGLTTGKMSYLLPSYVIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g1897.t44 CDD cd00012 NBD_sugar-kinase_HSP70_actin 69 150 0.0000288
7 g1897.t44 Gene3D G3DSA:3.30.420.40 - 42 157 0.0000000
2 g1897.t44 PANTHER PTHR19443:SF4 HEXOKINASE-2 15 152 0.0000000
3 g1897.t44 PANTHER PTHR19443 HEXOKINASE 15 152 0.0000000
4 g1897.t44 PRINTS PR00475 Hexokinase family signature 69 85 0.0000000
5 g1897.t44 PRINTS PR00475 Hexokinase family signature 136 161 0.0000000
1 g1897.t44 Pfam PF00349 Hexokinase 12 154 0.0000000
8 g1897.t44 ProSiteProfiles PS51748 Hexokinase domain profile. 4 164 16.5460000
6 g1897.t44 SUPERFAMILY SSF53067 Actin-like ATPase domain 8 154 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0001678 cellular glucose homeostasis BP
GO:0005524 ATP binding MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0005975 carbohydrate metabolic process BP
GO:0005536 glucose binding MF
GO:0004396 hexokinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values