General information for g191.t31
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein transport protein Sec23A.
Parent gene
- The parent gene g191 is located on chr_3: 1637197..1639086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g191 | g191.t31 | isoform | g191.t31 | 1635575 | 1637197 |
| chr_3 | g191 | g191.t31 | exon | g191.t31.exon1 | 1635575 | 1636608 |
| chr_3 | g191 | g191.t31 | cds | g191.t31.CDS1 | 1635577 | 1636608 |
| chr_3 | g191 | g191.t31 | exon | g191.t31.exon2 | 1636672 | 1637197 |
| chr_3 | g191 | g191.t31 | cds | g191.t31.CDS2 | 1636672 | 1636950 |
| chr_3 | g191 | g191.t31 | TSS | g191.t31 | 1637210 | 1637210 |
| chr_3 | g191 | g191.t31 | TTS | g191.t31 | NA | NA |
Sequences
>g191.t31 Gene=g191 Length=1560
ATGTACTTTCTCTCCACAAGTTCCAAGTGTAAATTTTCATTTGGTTCAGTGTTAATTAAA
GGAAAATTAAATAAATTAAATATATAACAAGCAAGATTTTGTAAGTATACATCGAAAGTA
TCTCAAGTTTAGTCAAAAACATTTAGTTTTATTGAATTTAGCCAAAAATATTTACCTTGA
GTGACGTGGAAGTAAAAATTAATAATCTTATTTCCTTTGAATTTTAGTAAAATTAATTGA
CAACATTATGGCAACATACGAAGAATATATTCAACAGAATGAAGATCGTGATGGAATTCG
CTTTACGTGGAACGTTTGGCCCTCGAGCCGTGTTGATGCAACTAAATTAGTTGTGCCTCT
TGCTTGCTTGTATCAACCATTTAAAGAACGAAATGATTTGCCACCAATTATGTATGAGCC
TGTCTTGTGTACGAGAACTACATGTCGTGCTATTTTAAATCCTATGTGTCAAGTTGATTA
TCGTGCAAAATTGTGGGTCTGTAACTTTTGTTTTCAACGTAATCCTTTTCCACCACAATA
TGCTGCAATTTCTGAGCAGCATCAACCAGCTGAATTAATACCTGGTTTTAGTACAATTGA
GTACACTATTACTCGTGCACCATGTATGCCTCCAGTTTTTCTGTTCGTAGTCGATACTTG
TATGGATGATGAAGAACTAACAGCCTTGAAAGATTCACTTTCAATGTCATTAAGTTTATT
GCCTTCAAATGCACTTGTTGGATTAATTACTTTTGGTAAAATGGTTCAAGTTCATGAGCT
TTGCAATGAAGGATGCTCGAAAAGTTATGTTTTTCGTGGCACAAAAGATTTGAATGCTAA
GCAAATTCAAGATATGCTTGGAATTGGAAGAGGTGGTGCTACTATACAACAACAACAGCA
GCAACCTCAACAAAGGATGCCACAACAGGCACCTCAACCACCAGCAAACAGGTTTTTGCA
GCCGTTACAAAAGTGTGACATGGCATTGACTGATATGTTGGGTGAAATGCAACGCGATCC
TTGGCCTGTATCTCAAGGCAAACGTCCATTGAGAGCAACTGGTGCGGCTCTTTCAATTGC
AGTTGGTTTATTGGAGTGTACTTATCCAAATACAGCTGCACGCATTTTACTTTTTGTTGG
TGGTCCTTGTTCAACAGGTCCTGGACAAGTCGTTGATGATGAATTAAAACATCCAATTCG
TTCTCATCATGATATTCATAAAGATAATGCAAAATATATGAAAAAAAGTATCAAGCATTA
TGAAGCACTTGCTTTGCGAACTGCAACAAATGGGCATTGTATTGACATTTATTCATGTGC
ACTTGATCAAACTGGTTTGATGGAAATGAAGCAATGTTGTAATTCAACTGGTGGTCACAT
GGTAATGGGAGATTCATTCAATTCTTCACTATTTAAACAAACATTCCAACGTGTCTTTGC
CACTGATCCGAAAAATGATCTTAAAATGGGCTTCAATGCAACTTTAGAAGTGAAATGTTC
ACGTGAACTTAAAATTGAAGGTGGCATTGGTCCTTGTGTATCTTTGAATGTTAAAAATGC
>g191.t31 Gene=g191 Length=437
MATYEEYIQQNEDRDGIRFTWNVWPSSRVDATKLVVPLACLYQPFKERNDLPPIMYEPVL
CTRTTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYT
ITRAPCMPPVFLFVVDTCMDDEELTALKDSLSMSLSLLPSNALVGLITFGKMVQVHELCN
EGCSKSYVFRGTKDLNAKQIQDMLGIGRGGATIQQQQQQPQQRMPQQAPQPPANRFLQPL
QKCDMALTDMLGEMQRDPWPVSQGKRPLRATGAALSIAVGLLECTYPNTAARILLFVGGP
CSTGPGQVVDDELKHPIRSHHDIHKDNAKYMKKSIKHYEALALRTATNGHCIDIYSCALD
QTGLMEMKQCCNSTGGHMVMGDSFNSSLFKQTFQRVFATDPKNDLKMGFNATLEVKCSRE
LKIEGGIGPCVSLNVKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g191.t31 | Gene3D | G3DSA:2.60.40.1670 | - | 14 | 436 | 8.8E-188 |
| 11 | g191.t31 | Gene3D | G3DSA:2.30.30.380 | - | 55 | 116 | 8.8E-188 |
| 9 | g191.t31 | Gene3D | G3DSA:3.40.50.410 | - | 128 | 407 | 8.8E-188 |
| 8 | g191.t31 | MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 230 | - |
| 3 | g191.t31 | PANTHER | PTHR11141 | PROTEIN TRANSPORT PROTEIN SEC23 | 1 | 436 | 8.4E-227 |
| 4 | g191.t31 | PANTHER | PTHR11141:SF7 | PROTEIN TRANSPORT PROTEIN SEC23A | 1 | 436 | 8.4E-227 |
| 1 | g191.t31 | Pfam | PF04810 | Sec23/Sec24 zinc finger | 58 | 98 | 9.7E-16 |
| 2 | g191.t31 | Pfam | PF04811 | Sec23/Sec24 trunk domain | 127 | 397 | 8.0E-82 |
| 5 | g191.t31 | SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 8 | 437 | 5.23E-30 |
| 6 | g191.t31 | SUPERFAMILY | SSF82919 | Zn-finger domain of Sec23/24 | 47 | 129 | 8.76E-21 |
| 7 | g191.t31 | SUPERFAMILY | SSF53300 | vWA-like | 127 | 397 | 1.85E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
| GO:0030127 | COPII vesicle coat | CC |
| GO:0008270 | zinc ion binding | MF |
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
