Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1963 g1963.t5 TSS g1963.t5 14109864 14109864
chr_3 g1963 g1963.t5 isoform g1963.t5 14109993 14111512
chr_3 g1963 g1963.t5 exon g1963.t5.exon1 14109993 14110074
chr_3 g1963 g1963.t5 exon g1963.t5.exon2 14110175 14110270
chr_3 g1963 g1963.t5 exon g1963.t5.exon3 14110343 14110626
chr_3 g1963 g1963.t5 exon g1963.t5.exon4 14110778 14110878
chr_3 g1963 g1963.t5 exon g1963.t5.exon5 14110967 14111512
chr_3 g1963 g1963.t5 cds g1963.t5.CDS1 14111035 14111511
chr_3 g1963 g1963.t5 TTS g1963.t5 14111869 14111869

Sequences

>g1963.t5 Gene=g1963 Length=1109
ATGATTGTGAATTTACCAATTTTAAGTATTGTAATAGGAATTTTTAGCTATTTTGCGTTA
TGTGATAAACCAATTTTGAGAGGTATTGATCCTCAAAGAGCTCAATTATATGCAAATAAC
AATGACAAATTTACTTGTTTCGATGGGAAAAAGACGATAAAGTACACGCAGCTGAATGAT
GACTATTGTGATTGTGCTGATGCAAGCGATGAGCCAGGCACTTCTGCGTGTGTTAGTGGA
AGATTTTTCTGTATCAATGCCGGTTTTAAGAGTTTAATAATTCCAAGTTCTCGTGTAAAT
GATGGAATTTGTGATTGTTGCGATGGTTCAGATGAATACTTTAGTAACGCAAAATGTATA
AATAATTGCATTGAACTCGGATCAGCTGATCGATTGAGAGAAAAGCAGCTAGCAGAATTA
CTAAAGAATGGCAATCAACTTAGACTAGAATTAGCTCAGAAAAAGAAGAGAGTAAAAAGC
AAAAGGAAGAAGAAGAAGCTCAAAAGAATCGAGTTGAAGCTGAAGAGACTTTTCTTAAAT
ACGATTCAAATAGCGATGGAAAAACGACAATGATGAACTCGATTTAGAGAGTTTCATTAC
ACTCGGATGGCCAAAGATTAAACCATTCCTCATGCTTGACTCAGGATTGTTCAAACCTCC
AAGAAGAAACGATGAACCAATTGATGATGAGGAGGAAGAACATGAGGTAGAACAACAAGG
AGGAGAGGAACCAAATGAGGAAGCAGAACTATTGAATGAAGAAGAGGAACAACATCATGA
AGAAGAAGGTGAATTTGATGAGGAAGCACAAGAAGAGCCACAAAATGAGGCACCGCCAAC
ACCTCAAGTTCAATATGATGATGAAACACAAAGATTAATTCATGAAGCCAATGAAGCAAG
AAATCAATATGACATCGCTGATCGTGAATATAGAGAAATTGAAACAGAATTTAATAAGAT
TAAGAGTGCACTTGAAAAAGACTTTGGTCCTGAGGAAGAATTTGCACCACTCAATGGTGA
ATGCTTCAATTATGAAGATCGTGAATACATTTATAAATTGTGCATGTTTGACAAGGCTAC
ACAACAGCCTAAATCAGGTGGAAGCGAAA

>g1963.t5 Gene=g1963 Length=159
MLDSGLFKPPRRNDEPIDDEEEEHEVEQQGGEEPNEEAELLNEEEEQHHEEEGEFDEEAQ
EEPQNEAPPTPQVQYDDETQRLIHEANEARNQYDIADREYREIETEFNKIKSALEKDFGP
EEEFAPLNGECFNYEDREYIYKLCMFDKATQQPKSGGSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1963.t5 Coils Coil Coil 41 61 -
7 g1963.t5 Coils Coil Coil 79 106 -
5 g1963.t5 MobiDBLite mobidb-lite consensus disorder prediction 1 90 -
4 g1963.t5 MobiDBLite mobidb-lite consensus disorder prediction 18 63 -
2 g1963.t5 PANTHER PTHR12630:SF1 GLUCOSIDASE 2 SUBUNIT BETA 20 155 2.3E-17
3 g1963.t5 PANTHER PTHR12630 N-LINKED OLIGOSACCHARIDE PROCESSING 20 155 2.3E-17
1 g1963.t5 Pfam PF13015 Glucosidase II beta subunit-like protein 91 152 1.1E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006491 N-glycan processing BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed