General information for g1967.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1967 is located on chr_3: 14124806..14126094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1967 | g1967.t4 | isoform | g1967.t4 | 14124246 | 14126094 |
| chr_3 | g1967 | g1967.t4 | exon | g1967.t4.exon1 | 14124246 | 14125225 |
| chr_3 | g1967 | g1967.t4 | cds | g1967.t4.CDS1 | 14125173 | 14125225 |
| chr_3 | g1967 | g1967.t4 | exon | g1967.t4.exon2 | 14125281 | 14125536 |
| chr_3 | g1967 | g1967.t4 | cds | g1967.t4.CDS2 | 14125281 | 14125536 |
| chr_3 | g1967 | g1967.t4 | exon | g1967.t4.exon3 | 14125596 | 14125720 |
| chr_3 | g1967 | g1967.t4 | cds | g1967.t4.CDS3 | 14125596 | 14125720 |
| chr_3 | g1967 | g1967.t4 | exon | g1967.t4.exon4 | 14125787 | 14125885 |
| chr_3 | g1967 | g1967.t4 | cds | g1967.t4.CDS4 | 14125787 | 14125885 |
| chr_3 | g1967 | g1967.t4 | exon | g1967.t4.exon5 | 14126052 | 14126094 |
| chr_3 | g1967 | g1967.t4 | cds | g1967.t4.CDS5 | 14126052 | 14126094 |
| chr_3 | g1967 | g1967.t4 | TSS | g1967.t4 | 14126120 | 14126120 |
| chr_3 | g1967 | g1967.t4 | TTS | g1967.t4 | NA | NA |
Sequences
>g1967.t4 Gene=g1967 Length=1503
ATGGAAAAAATTATTTTACTCGTTTTCTCATTAATTTCATTAGCATCTTGCAATGACTTT
ATAGTCCTTAGCTCACCTAAATCAATAAGCTTTAAAGGCTCAAATGATTTGCCATCACAA
GCAATTAGCGAAGTTTTTGCAGCCTCTCTTGGCTATTCTGTCTATTCAACTGAGCCATGG
ACTGGATTATATGTAAACAATCCACTTGAAACCGCGAAAACTGTTGTCTCATTTGTTGTT
GAAGGTGCCGATGACTTAAATTTTGATAATGCAAAATCATTTAAAGTGACTGGTGATGAT
ATGTTTTTCGAGCAAACAATTCATCAAAAAGTGCTGGAACACAGTCATTTGGCTGTCGAT
ATCGATTTAGCTAACAGAGAAGAAGAACTTGTTGTTACATCAATTGGTGATGTTGAGAAA
TCAACACTCAGTGTTAAACTTCAATATTTGAACTCAAAGAACAAAGGTGACAAAGATTTC
TTGGACCAAATTTCATATCTCAATGGATTAAAAGACATTGTGAATTGCAAACTTAAACAC
TCAACCAGCATACATCAATGTTCGTCTTTCACTTAACTCACTTTCAAAATCTGACTCAAC
AAGAACAGAAGCCATCAAATTGTTGCGTTCAACACTCAACAAGCTCAATGATGCCATTCA
AAAGGCATATAATGGCAATGCATTGGTCACAGTCATCACAGTCGAAAGTCATCAAATTCA
TTCACGATCAAAGCGTGAAATCGTTGAAAATGATGAAGAAAACAAATACAATCTTGCCAC
TTTGAGATCATCAGATTATCCAGTAATTTTCAACATTGTCTTCTGGTTTACAATTATTCT
TCTCTTTTCACTTATTGCCATTTCATTGGCATTGAGCAATGTTGAAGATAAAGATTCAAT
TATTTATCGTATGACTGGTGCTCGTGGAAAAAAAGATAACTAAACGCGAGTGTTGAGTGT
GAAATTGTAGTGAAATATATTTGTGAGCATCATGAATAAAGATCAAGTTAAATTTACAAA
ATGCTCGCATTAAAAAGTATTCCAAAGTTATATCATTCATGTTACTTACATAAATATGCG
AAAGAACTTTTCATCATTTTTCGCTAACATAAATTAAATATATTTGTAAAAATTAAAAAA
AGGCTAAATATCATAATAAATATAGAGAGTTGCTGTATAATTGTGATTCAATACGAACGA
CACAAGATATATAATATAATAATGAGTAAAACTATTATTTTCCTCTATTTAACGTTTGTT
GAAAGTTTCATTTATAATTCGCCATTAATTATTATAAATTATTATTGTAAAATCAAATTT
AGTTTCTTGTGAATGTTCATTCATTGATGATTTAAATAAAGAATAATTATTAGAAATAGA
TATGATCTTAAACATTCAATCTCTTTCATTCATTTAAATAAATTTTGCAGATCTTTTTCG
AAAAAGAGAAAATTTCGTTATAGTGAGGTTTTCTTGTAAAACGATCATGACGTCATAATT
TTG
>g1967.t4 Gene=g1967 Length=191
MEKIILLVFSLISLASCNDFIVLSSPKSISFKGSNDLPSQAISEVFAASLGYSVYSTEPW
TGLYVNNPLETAKTVVSFVVEGADDLNFDNAKSFKVTGDDMFFEQTIHQKVLEHSHLAVD
IDLANREEELVVTSIGDVEKSTLSVKLQYLNSKNKGDKDFLDQISYLNGLKDIVNCKLKH
STSIHQCSSFT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g1967.t4 | PANTHER | PTHR13351 | RENIN RECEPTOR | 1 | 177 | 1.1E-17 |
| 5 | g1967.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 6 | g1967.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 7 | g1967.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 12 | - |
| 8 | g1967.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 4 | g1967.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 191 | - |
| 3 | g1967.t4 | ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | 5.0 |
| 2 | g1967.t4 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0038023 | signaling receptor activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
