General information for g1967.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATPase H(+)-transporting accessory protein 2.
Parent gene
- The parent gene g1967 is located on chr_3: 14124806..14126094 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1967 | g1967.t6 | TTS | g1967.t6 | 14124364 | 14124364 |
| chr_3 | g1967 | g1967.t6 | isoform | g1967.t6 | 14124806 | 14125720 |
| chr_3 | g1967 | g1967.t6 | exon | g1967.t6.exon1 | 14124806 | 14125225 |
| chr_3 | g1967 | g1967.t6 | cds | g1967.t6.CDS1 | 14124806 | 14125225 |
| chr_3 | g1967 | g1967.t6 | exon | g1967.t6.exon2 | 14125285 | 14125536 |
| chr_3 | g1967 | g1967.t6 | cds | g1967.t6.CDS2 | 14125285 | 14125503 |
| chr_3 | g1967 | g1967.t6 | exon | g1967.t6.exon3 | 14125596 | 14125720 |
| chr_3 | g1967 | g1967.t6 | TSS | g1967.t6 | 14126120 | 14126120 |
Sequences
>g1967.t6 Gene=g1967 Length=797
CCTCTCTTGGCTATTCTGTCTATTCAACTGAGCCATGGACTGGATTATATGTAAACAATC
CACTTGAAACCGCGAAAACTGTTGTCTCATTTGTTGTTGAAGGTGCCGATGACTTAAATT
TTGATAATGCAAAATCATTTAAAGTGACTGGTGATGATATGTTTTTCGAGCAAACAATTC
ATCAAAAAGTGCTGGAACACAGTCATTTGGCTGTCGATATCGATTTAGCTAACAGAGAAG
AAGAACTTGTTGTTACATCAATTGGTGATGTTGAGAAATCAACACTCAGTGTTAAACTTC
AATATTTGAACTCAAAGAACAAAGGTGACAAAGATTTCTTGGACCAAATTTCATATCTCA
ATGGATTAAAAGACATTATTGCAAACTTAAACACTCAACCAGCATACATCAATGTTCGTC
TTTCACTTAACTCACTTTCAAAATCTGACTCAACAAGAACAGAAGCCATCAAATTGTTGC
GTTCAACACTCAACAAGCTCAATGATGCCATTCAAAAGGCATATAATGGCAATGCATTGG
TCACAGTCATCACAGTCGAAAGTCATCAAATTCATTCACGATCAAAGCGTGAAATCGTTG
AAAATGATGAAGAAAACAAATACAATCTTGCCACTTTGAGATCATCAGATTATCCAGTAA
TTTTCAACATTGTCTTCTGGTTTACAATTATTCTTCTCTTTTCACTTATTGCCATTTCAT
TGGCATTGAGCAATGTTGAAGATAAAGATTCAATTATTTATCGTATGACTGGTGCTCGTG
GAAAAAAAGATAACTAA
>g1967.t6 Gene=g1967 Length=212
MFFEQTIHQKVLEHSHLAVDIDLANREEELVVTSIGDVEKSTLSVKLQYLNSKNKGDKDF
LDQISYLNGLKDIIANLNTQPAYINVRLSLNSLSKSDSTRTEAIKLLRSTLNKLNDAIQK
AYNGNALVTVITVESHQIHSRSKREIVENDEENKYNLATLRSSDYPVIFNIVFWFTIILL
FSLIAISLALSNVEDKDSIIYRMTGARGKKDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1967.t6 | PANTHER | PTHR13351 | RENIN RECEPTOR | 5 | 211 | 1.5E-32 |
| 1 | g1967.t6 | Pfam | PF07850 | Renin receptor-like protein | 121 | 211 | 1.8E-25 |
| 5 | g1967.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 170 | - |
| 6 | g1967.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 171 | 193 | - |
| 4 | g1967.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 194 | 212 | - |
| 3 | g1967.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 171 | 193 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0038023 | signaling receptor activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
