Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenylosuccinate synthetase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1978 g1978.t14 TSS g1978.t14 14170301 14170301
chr_3 g1978 g1978.t14 isoform g1978.t14 14170363 14174042
chr_3 g1978 g1978.t14 exon g1978.t14.exon1 14170363 14170572
chr_3 g1978 g1978.t14 cds g1978.t14.CDS1 14170363 14170572
chr_3 g1978 g1978.t14 exon g1978.t14.exon2 14171681 14171783
chr_3 g1978 g1978.t14 cds g1978.t14.CDS2 14171681 14171783
chr_3 g1978 g1978.t14 exon g1978.t14.exon3 14172083 14172368
chr_3 g1978 g1978.t14 cds g1978.t14.CDS3 14172083 14172368
chr_3 g1978 g1978.t14 exon g1978.t14.exon4 14172471 14172610
chr_3 g1978 g1978.t14 cds g1978.t14.CDS4 14172471 14172610
chr_3 g1978 g1978.t14 exon g1978.t14.exon5 14172678 14172731
chr_3 g1978 g1978.t14 cds g1978.t14.CDS5 14172678 14172731
chr_3 g1978 g1978.t14 exon g1978.t14.exon6 14172807 14172973
chr_3 g1978 g1978.t14 cds g1978.t14.CDS6 14172807 14172973
chr_3 g1978 g1978.t14 exon g1978.t14.exon7 14173051 14173235
chr_3 g1978 g1978.t14 cds g1978.t14.CDS7 14173051 14173235
chr_3 g1978 g1978.t14 exon g1978.t14.exon8 14173296 14174042
chr_3 g1978 g1978.t14 cds g1978.t14.CDS8 14173296 14173536
chr_3 g1978 g1978.t14 TTS g1978.t14 14174000 14174000

Sequences

>g1978.t14 Gene=g1978 Length=1892
ATGGCATCATCAACGCTAAATGGAGAAATCAATAATATAAACTACACAGATGATGTTATT
TCCCGTAATCGTTCTGGATCTTTAACTGGATCAGTTAGTAGTTATTCAAACAAGGTTTTA
GTAGTACTCGGTGCACAATGGGGAGATGAAGGGAAGGGAAAAGTCGTGGATATGCTTTCA
GTCAACGCTGACGTTGTTTGTAGATGTCAAGGCGGTAATAATGCAGGACATACAGTTGTC
GTTGATGGAAAGGAATTTGATTTTCATCTTTTGCCGAGTGGAATAATCAATGAAAAAAGC
ATATCTATAATTGGCAATGGAGTTGTTGTACATCTTCCTGGCTTATTTGAGGAATTGGCA
AAGAATGAGGCAAAAGGCTTATCAGATTGGCAAAATCGTTTGATTGTCTCTGACAGAGCT
CATTTGGTTTTTGATTTTCATCAACAAGTTGATGGATTGCAAGAGGCAGAAAAATGTAGA
GAAGGAAAATCACTTGGCACAACGAAAAAGGGCATTGGTCCAGCCTATTCTTCGAAAGCC
ACACGTAATGGCATTCGAGTTGGAGACTTGCTTGGTGATTTCAACACATTTAGTGACAAA
TTTCGTTCAATTGTTGCTACTCATCAACGTTTGTTTCCTGGCTGTGTCGTTGATGTTGAA
GCAGAACTCACTCGATATCAACAGTATGCTGAAAAATTACGACCTTATGTGAAAGACACC
ATCTTTTATCTTCATTCTGCATTGCGAAATGGCAAGACTGTTTTGGTCGAAGGAGCAAAT
GCGGCAATGTTGGATATCGATTTTGGAACATATCCTTATGTGACGAGTAGTAATTGCTCA
ATCGGTGGCGTTTTAACAGGTCTCGGTTTGCCGCCAAAAGTTATTGGAGAAGTCATTGGT
GTTGTTAAGTCATATACGACAAGAGTCGGTGATGGACCATTCCCCACAGAATTAAAAGAT
GACATTGGTGAACTTTTACAAACGCGTGGTGGAGAAATTGGTGTCACAACAAAACGAAAA
CGTCGTTGTGGTTGGTTGGATTTACCTGTGTTACGATATACCTCACTTGTCAATGGTTAT
TCAGCAATTTGCTTAACGAAACTTGATATCCTTGATACTTTGCCTACAATTAAAATTGGC
ATCAATTATAAATTACATAACAAAACGATCTACAATTTTCCTGGATCTATTTCTGATTTG
GCTCAAGTTGAGGTCGAATATGTTACACTCCCTGGTTGGCAACAATCGACTGCAAATATT
CGCGACTTTCGTGACCTACCCGAAAATGCACAAAACTATGTGCGATTTATTGAGAAGGAT
TTGGATGTTCCAATTAAGTGGATTGGAGTTGGAAAAGGGCGAGAATCAATTATTAAAGTA
TATTAAAAACATGTGCAGTATTGCACTTAAAATTACTTATTTTTTTAACTTGATAAATTC
TTCAGAAACCAAATGAGATATAGCCCTTTCCTATTTTGTTAAAACACTCTCTTTTATAAA
AGAGCCTTAAATATTTTTTTTATAAAATTAAATTGTAAATGATCATTTTGATTGTGAACA
AGAATTAACATTTTGAGGGAGCTTAATGGCTTTTAAATACTTAAATTTTTATCTTAATAG
TAATAATTTAGCCAAGAACAGTAATCGCACATGCACACAACAAACACTATACTTAAATTG
CTATTACTTATAATTAGCATATGATACACTTTAAATAATCAATTCCAATGTGAAAAAAAA
TTTGAATGTTAAGAAAATATCTTTGTTTGATGCAATGAACAGAAACTTATAGAGACGAGA
TATGCTAAACTTGCTATATTTTAAATAAATTTTTAATTGTCCTTTAAAACAAAAAAAACT
TTTATTTTAATTTAGAAAATATAATTAACAGT

>g1978.t14 Gene=g1978 Length=461
MASSTLNGEINNINYTDDVISRNRSGSLTGSVSSYSNKVLVVLGAQWGDEGKGKVVDMLS
VNADVVCRCQGGNNAGHTVVVDGKEFDFHLLPSGIINEKSISIIGNGVVVHLPGLFEELA
KNEAKGLSDWQNRLIVSDRAHLVFDFHQQVDGLQEAEKCREGKSLGTTKKGIGPAYSSKA
TRNGIRVGDLLGDFNTFSDKFRSIVATHQRLFPGCVVDVEAELTRYQQYAEKLRPYVKDT
IFYLHSALRNGKTVLVEGANAAMLDIDFGTYPYVTSSNCSIGGVLTGLGLPPKVIGEVIG
VVKSYTTRVGDGPFPTELKDDIGELLQTRGGEIGVTTKRKRRCGWLDLPVLRYTSLVNGY
SAICLTKLDILDTLPTIKIGINYKLHNKTIYNFPGSISDLAQVEVEYVTLPGWQQSTANI
RDFRDLPENAQNYVRFIEKDLDVPIKWIGVGKGRESIIKVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g1978.t14 CDD cd03108 AdSS 38 458 0.0
7 g1978.t14 Gene3D G3DSA:3.40.440.10 Adenylosuccinate Synthetase 41 295 3.3E-111
8 g1978.t14 Gene3D G3DSA:1.10.300.10 Adenylosuccinate Synthetase 138 236 3.3E-111
6 g1978.t14 Gene3D G3DSA:3.90.170.10 Adenylosuccinate Synthetase 302 461 2.4E-66
4 g1978.t14 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 461 177.709518
2 g1978.t14 PANTHER PTHR11846 ADENYLOSUCCINATE SYNTHETASE 28 459 3.5E-199
3 g1978.t14 PANTHER PTHR11846:SF2 ADENYLOSUCCINATE SYNTHETASE ISOZYME 1 28 459 3.5E-199
1 g1978.t14 Pfam PF00709 Adenylosuccinate synthetase 41 458 1.5E-177
10 g1978.t14 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 46 53 -
11 g1978.t14 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 171 182 -
12 g1978.t14 SMART SM00788 adenylsucc_synt 39 459 2.9E-258
5 g1978.t14 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 37 459 2.66E-160
13 g1978.t14 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 41 459 7.1E-157

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006164 purine nucleotide biosynthetic process BP
GO:0005525 GTP binding MF
GO:0004019 adenylosuccinate synthase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed