Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenylosuccinate synthetase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1978 g1978.t23 TSS g1978.t23 14170301 14170301
chr_3 g1978 g1978.t23 isoform g1978.t23 14170363 14174042
chr_3 g1978 g1978.t23 exon g1978.t23.exon1 14170363 14170572
chr_3 g1978 g1978.t23 cds g1978.t23.CDS1 14170363 14170572
chr_3 g1978 g1978.t23 exon g1978.t23.exon2 14171681 14171783
chr_3 g1978 g1978.t23 cds g1978.t23.CDS2 14171681 14171783
chr_3 g1978 g1978.t23 exon g1978.t23.exon3 14172092 14172368
chr_3 g1978 g1978.t23 cds g1978.t23.CDS3 14172092 14172368
chr_3 g1978 g1978.t23 exon g1978.t23.exon4 14172471 14172610
chr_3 g1978 g1978.t23 cds g1978.t23.CDS4 14172471 14172610
chr_3 g1978 g1978.t23 exon g1978.t23.exon5 14172678 14172731
chr_3 g1978 g1978.t23 cds g1978.t23.CDS5 14172678 14172731
chr_3 g1978 g1978.t23 exon g1978.t23.exon6 14172807 14172973
chr_3 g1978 g1978.t23 cds g1978.t23.CDS6 14172807 14172973
chr_3 g1978 g1978.t23 exon g1978.t23.exon7 14173051 14173235
chr_3 g1978 g1978.t23 cds g1978.t23.CDS7 14173051 14173235
chr_3 g1978 g1978.t23 exon g1978.t23.exon8 14173296 14174042
chr_3 g1978 g1978.t23 cds g1978.t23.CDS8 14173296 14173536
chr_3 g1978 g1978.t23 TTS g1978.t23 14174000 14174000

Sequences

>g1978.t23 Gene=g1978 Length=1883
ATGGCATCATCAACGCTAAATGGAGAAATCAATAATATAAACTACACAGATGATGTTATT
TCCCGTAATCGTTCTGGATCTTTAACTGGATCAGTTAGTAGTTATTCAAACAAGGTTTTA
GTAGTACTCGGTGCACAATGGGGAGATGAAGGGAAGGGAAAAGTCGTGGATATGCTTTCA
GTCAACGCTGACGTTGTTTGTAGATGTCAAGGCGGTAATAATGCAGGACATACAGTTGTC
GTTGATGGAAAGGAATTTGATTTTCATCTTTTGCCGAGTGGAATAATCAATGAAAAAAGC
ATATCTATAATTGTTGTTGTACATCTTCCTGGCTTATTTGAGGAATTGGCAAAGAATGAG
GCAAAAGGCTTATCAGATTGGCAAAATCGTTTGATTGTCTCTGACAGAGCTCATTTGGTT
TTTGATTTTCATCAACAAGTTGATGGATTGCAAGAGGCAGAAAAATGTAGAGAAGGAAAA
TCACTTGGCACAACGAAAAAGGGCATTGGTCCAGCCTATTCTTCGAAAGCCACACGTAAT
GGCATTCGAGTTGGAGACTTGCTTGGTGATTTCAACACATTTAGTGACAAATTTCGTTCA
ATTGTTGCTACTCATCAACGTTTGTTTCCTGGCTGTGTCGTTGATGTTGAAGCAGAACTC
ACTCGATATCAACAGTATGCTGAAAAATTACGACCTTATGTGAAAGACACCATCTTTTAT
CTTCATTCTGCATTGCGAAATGGCAAGACTGTTTTGGTCGAAGGAGCAAATGCGGCAATG
TTGGATATCGATTTTGGAACATATCCTTATGTGACGAGTAGTAATTGCTCAATCGGTGGC
GTTTTAACAGGTCTCGGTTTGCCGCCAAAAGTTATTGGAGAAGTCATTGGTGTTGTTAAG
TCATATACGACAAGAGTCGGTGATGGACCATTCCCCACAGAATTAAAAGATGACATTGGT
GAACTTTTACAAACGCGTGGTGGAGAAATTGGTGTCACAACAAAACGAAAACGTCGTTGT
GGTTGGTTGGATTTACCTGTGTTACGATATACCTCACTTGTCAATGGTTATTCAGCAATT
TGCTTAACGAAACTTGATATCCTTGATACTTTGCCTACAATTAAAATTGGCATCAATTAT
AAATTACATAACAAAACGATCTACAATTTTCCTGGATCTATTTCTGATTTGGCTCAAGTT
GAGGTCGAATATGTTACACTCCCTGGTTGGCAACAATCGACTGCAAATATTCGCGACTTT
CGTGACCTACCCGAAAATGCACAAAACTATGTGCGATTTATTGAGAAGGATTTGGATGTT
CCAATTAAGTGGATTGGAGTTGGAAAAGGGCGAGAATCAATTATTAAAGTATATTAAAAA
CATGTGCAGTATTGCACTTAAAATTACTTATTTTTTTAACTTGATAAATTCTTCAGAAAC
CAAATGAGATATAGCCCTTTCCTATTTTGTTAAAACACTCTCTTTTATAAAAGAGCCTTA
AATATTTTTTTTATAAAATTAAATTGTAAATGATCATTTTGATTGTGAACAAGAATTAAC
ATTTTGAGGGAGCTTAATGGCTTTTAAATACTTAAATTTTTATCTTAATAGTAATAATTT
AGCCAAGAACAGTAATCGCACATGCACACAACAAACACTATACTTAAATTGCTATTACTT
ATAATTAGCATATGATACACTTTAAATAATCAATTCCAATGTGAAAAAAAATTTGAATGT
TAAGAAAATATCTTTGTTTGATGCAATGAACAGAAACTTATAGAGACGAGATATGCTAAA
CTTGCTATATTTTAAATAAATTTTTAATTGTCCTTTAAAACAAAAAAAACTTTTATTTTA
ATTTAGAAAATATAATTAACAGT

>g1978.t23 Gene=g1978 Length=458
MASSTLNGEINNINYTDDVISRNRSGSLTGSVSSYSNKVLVVLGAQWGDEGKGKVVDMLS
VNADVVCRCQGGNNAGHTVVVDGKEFDFHLLPSGIINEKSISIIVVVHLPGLFEELAKNE
AKGLSDWQNRLIVSDRAHLVFDFHQQVDGLQEAEKCREGKSLGTTKKGIGPAYSSKATRN
GIRVGDLLGDFNTFSDKFRSIVATHQRLFPGCVVDVEAELTRYQQYAEKLRPYVKDTIFY
LHSALRNGKTVLVEGANAAMLDIDFGTYPYVTSSNCSIGGVLTGLGLPPKVIGEVIGVVK
SYTTRVGDGPFPTELKDDIGELLQTRGGEIGVTTKRKRRCGWLDLPVLRYTSLVNGYSAI
CLTKLDILDTLPTIKIGINYKLHNKTIYNFPGSISDLAQVEVEYVTLPGWQQSTANIRDF
RDLPENAQNYVRFIEKDLDVPIKWIGVGKGRESIIKVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g1978.t23 CDD cd03108 AdSS 38 455 0.0
7 g1978.t23 Gene3D G3DSA:3.40.440.10 Adenylosuccinate Synthetase 41 292 1.8E-106
8 g1978.t23 Gene3D G3DSA:1.10.300.10 Adenylosuccinate Synthetase 135 233 1.8E-106
6 g1978.t23 Gene3D G3DSA:3.90.170.10 Adenylosuccinate Synthetase 299 458 2.4E-66
4 g1978.t23 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 458 170.647675
2 g1978.t23 PANTHER PTHR11846 ADENYLOSUCCINATE SYNTHETASE 28 456 8.2E-194
3 g1978.t23 PANTHER PTHR11846:SF2 ADENYLOSUCCINATE SYNTHETASE ISOZYME 1 28 456 8.2E-194
1 g1978.t23 Pfam PF00709 Adenylosuccinate synthetase 41 455 2.1E-172
10 g1978.t23 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 46 53 -
11 g1978.t23 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 168 179 -
12 g1978.t23 SMART SM00788 adenylsucc_synt 39 456 1.6E-250
5 g1978.t23 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 37 456 2.02E-155
13 g1978.t23 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 41 456 6.7E-152

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006164 purine nucleotide biosynthetic process BP
GO:0005525 GTP binding MF
GO:0004019 adenylosuccinate synthase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values