General information for g1978.t43
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1978 is located on chr_3: 14175617..14176064 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1978 | g1978.t43 | isoform | g1978.t43 | 14172838 | 14174042 |
| chr_3 | g1978 | g1978.t43 | exon | g1978.t43.exon1 | 14172838 | 14172973 |
| chr_3 | g1978 | g1978.t43 | exon | g1978.t43.exon2 | 14173051 | 14173235 |
| chr_3 | g1978 | g1978.t43 | exon | g1978.t43.exon3 | 14173384 | 14174042 |
| chr_3 | g1978 | g1978.t43 | cds | g1978.t43.CDS1 | 14173436 | 14173606 |
| chr_3 | g1978 | g1978.t43 | TTS | g1978.t43 | 14174000 | 14174000 |
| chr_3 | g1978 | g1978.t43 | TSS | g1978.t43 | NA | NA |
Sequences
>g1978.t43 Gene=g1978 Length=980
GAGTAGTAATTGCTCAATCGGTGGCGTTTTAACAGGTCTCGGTTTGCCGCCAAAAGTTAT
TGGAGAAGTCATTGGTGTTGTTAAGTCATATACGACAAGAGTCGGTGATGGACCATTCCC
CACAGAATTAAAAGATGACATTGGTGAACTTTTACAAACGCGTGGTGGAGAAATTGGTGT
CACAACAAAACGAAAACGTCGTTGTGGTTGGTTGGATTTACCTGTGTTACGATATACCTC
ACTTGTCAATGGTTATTCAGCAATTTGCTTAACGAAACTTGATATCCTTGATACTTTGCC
TACAATTAAAATTGGCATCAAGGTTGGCAACAATCGACTGCAAATATTCGCGACTTTCGT
GACCTACCCGAAAATGCACAAAACTATGTGCGATTTATTGAGAAGGATTTGGATGTTCCA
ATTAAGTGGATTGGAGTTGGAAAAGGGCGAGAATCAATTATTAAAGTATATTAAAAACAT
GTGCAGTATTGCACTTAAAATTACTTATTTTTTTAACTTGATAAATTCTTCAGAAACCAA
ATGAGATATAGCCCTTTCCTATTTTGTTAAAACACTCTCTTTTATAAAAGAGCCTTAAAT
ATTTTTTTTATAAAATTAAATTGTAAATGATCATTTTGATTGTGAACAAGAATTAACATT
TTGAGGGAGCTTAATGGCTTTTAAATACTTAAATTTTTATCTTAATAGTAATAATTTAGC
CAAGAACAGTAATCGCACATGCACACAACAAACACTATACTTAAATTGCTATTACTTATA
ATTAGCATATGATACACTTTAAATAATCAATTCCAATGTGAAAAAAAATTTGAATGTTAA
GAAAATATCTTTGTTTGATGCAATGAACAGAAACTTATAGAGACGAGATATGCTAAACTT
GCTATATTTTAAATAAATTTTTAATTGTCCTTTAAAACAAAAAAAACTTTTATTTTAATT
TAGAAAATATAATTAACAGT
>g1978.t43 Gene=g1978 Length=56
MHKTMCDLLRRIWMFQLSGLELEKGENQLLKYIKNMCSIALKITYFFNLINSSETK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed