General information for g1982.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g1982 is located on chr_3: 14182421..14183218 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1982 | g1982.t1 | isoform | g1982.t1 | 14182421 | 14183218 |
| chr_3 | g1982 | g1982.t1 | exon | g1982.t1.exon1 | 14182421 | 14183218 |
| chr_3 | g1982 | g1982.t1 | cds | g1982.t1.CDS1 | 14182421 | 14183218 |
| chr_3 | g1982 | g1982.t1 | TTS | g1982.t1 | 14183215 | 14183215 |
| chr_3 | g1982 | g1982.t1 | TSS | g1982.t1 | NA | NA |
Sequences
>g1982.t1 Gene=g1982 Length=798
ATGAGAATCTCATTAATAGATGATTATGAACACTTAGATGAGGATGTGGAATATATAATA
GAAAATATATTGCAGGAAAATGATAATAGTGGGGACTTTAAAAAATTAGAAGAAGAATTT
TATTGTATTCTAGCAAATAGTTGTGACTGTATTGAATGTAAAAATGAAAAATGCAGTCAT
GGTGGCAGTTATGAAATTAAAAATAATAAATTGTTATTAAAAGAGGCGCGTGGGTGTGAT
GACTTGATATATGAGTGCAACGAAAATTGTTTTTGTTCACGCTCTCATAGCATGTGTCTT
AATAAACTTGTACAATTTGGTCCGCATGAAGGATTAGAAATTAAAAAGTTTCACGATAAG
GGTTATGGATTAATCACAAAAGAATTCATTCCAAAAGGAACGTTTATTTGTGAATATGCA
GGTGAAGTTCTAACAAAAAACGAAGCTTTTAAAAGAGATCAATTAAATCAAGCATCAAAT
AAGATGAATTATATCTTTTGTCTTAATGAAATCAGCATGACATCAAAAGATGAAAAAATT
CAAACATTTATCGATCCCAGTCGAAAAGGAAATATTGGTAGATATATTAATCATAGTTGT
GACGCAAATTGTGAAATTATAAGTGTACGAGTTGATTCAATTATTCCAAAAATTTCAATT
TTTGCAAAACGAGATATTTGTGCCCAACAAGAAATTACATTCAGCTATGGAGATGTAGAT
GCAAATAATAAAACAAAAATGTGCCTTTGTGGAGCAAATATATGTAAAATTTATTTACCA
AATATATCATTTTCTTAA
>g1982.t1 Gene=g1982 Length=265
MRISLIDDYEHLDEDVEYIIENILQENDNSGDFKKLEEEFYCILANSCDCIECKNEKCSH
GGSYEIKNNKLLLKEARGCDDLIYECNENCFCSRSHSMCLNKLVQFGPHEGLEIKKFHDK
GYGLITKEFIPKGTFICEYAGEVLTKNEAFKRDQLNQASNKMNYIFCLNEISMTSKDEKI
QTFIDPSRKGNIGRYINHSCDANCEIISVRVDSIIPKISIFAKRDICAQQEITFSYGDVD
ANNKTKMCLCGANICKIYLPNISFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1982.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 1 | 261 | 0.0 |
| 2 | g1982.t1 | PANTHER | PTHR46223 | HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H | 7 | 256 | 0.0 |
| 3 | g1982.t1 | PANTHER | PTHR46223:SF3 | HISTONE-LYSINE N-METHYLTRANSFERASE-RELATED | 7 | 256 | 0.0 |
| 1 | g1982.t1 | Pfam | PF00856 | SET domain | 121 | 237 | 0.0 |
| 7 | g1982.t1 | ProSiteProfiles | PS50280 | SET domain profile. | 110 | 237 | 19.2 |
| 5 | g1982.t1 | SMART | SM00317 | set_7 | 110 | 243 | 0.0 |
| 4 | g1982.t1 | SUPERFAMILY | SSF82199 | SET domain | 10 | 255 | 0.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K11433 ([histone H3]-lysine36 N-dimethyltransferase SETMAR)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
