Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1987 g1987.t14 isoform g1987.t14 14228767 14229943
chr_3 g1987 g1987.t14 exon g1987.t14.exon1 14228767 14229242
chr_3 g1987 g1987.t14 cds g1987.t14.CDS1 14229061 14229242
chr_3 g1987 g1987.t14 exon g1987.t14.exon2 14229305 14229594
chr_3 g1987 g1987.t14 cds g1987.t14.CDS2 14229305 14229594
chr_3 g1987 g1987.t14 exon g1987.t14.exon3 14229720 14229943
chr_3 g1987 g1987.t14 cds g1987.t14.CDS3 14229720 14229943
chr_3 g1987 g1987.t14 TSS g1987.t14 NA NA
chr_3 g1987 g1987.t14 TTS g1987.t14 NA NA

Sequences

>g1987.t14 Gene=g1987 Length=990
TGCTACAATTCATCACTCATCACCACATTTTTGAATGAAACCACATGTTATATCAAAGAT
ATCTCTTGTCGTTTTGTTAATCAACTGAAGGACGATGTAGCTATAAAAATATTTTATAAC
AATCTCGACTCAGCTGTTCATGACGTAAAAAATGGAAAAATTGTTGGCTTGATTCATTTC
AGTAAAGAATTTACAAACATACTACAGCAAAAATTTAATCGAATCGAAGTGGAAAAAATT
AGCTCATTAAATGCTGATTATGGAACGATAAATATTTATTTAGATCAATCAAGTATGGCA
GTGACAGAATTTCTAAGACGAAGGCTAGTTGAAACTTATCAACAATACTCAGAAAGTCTT
ATGGAAAGCTGTGGAATTTCTAAAAAGTATGGAAATATTCCAATCAATGTTCAAGCATTA
TTTGGCACATTGCAAGATGAATTTCAAAAATACATGTGTGTTGGTGTCGCAGTTCTCTGC
TACTTTTTTCAAGCATCATCTCTTACTAGCACAGCTTTAATTGGCGATCGAGTTGATGGA
ATTTGGAATAGAACACTTGTAGCTGGCACACAGCCATTGGAGTTAATTCTTTCACATCTT
GTACCATGCACTGTACTAATGTTGATCCAATGCACTGAATATTTCCTGTTACTTGTTTAT
TACTTCAGGGACAATCCAAATTCAAACATTTTTCTCTCAGGGTGCCTTTTTCTACTGCTA
GGCATATGTGGATTGATTTATGGAATTTCAGTGTCAGTATATGCTGGAATATTATGGCCA
ATTGAAGCAGTACCAATTTATTTACGTTATATAGGATATTCGATGCCATTCACTATACCA
ATTATTGCTATAAGAGGCCTCTTTTTCAAAGGACTAACATTCTGCGATCATATTGTTTAT
TTGTCATTCATCATTGCGATTTTGTGGACAATTTTCTCATTTATTTTGTGTTATTTTGGA
TTGAAAATTCGAAAATATCACAAAAGATGA

>g1987.t14 Gene=g1987 Length=231
MAVTEFLRRRLVETYQQYSESLMESCGISKKYGNIPINVQALFGTLQDEFQKYMCVGVAV
LCYFFQASSLTSTALIGDRVDGIWNRTLVAGTQPLELILSHLVPCTVLMLIQCTEYFLLL
VYYFRDNPNSNIFLSGCLFLLLGICGLIYGISVSVYAGILWPIEAVPIYLRYIGYSMPFT
IPIIAIRGLFFKGLTFCDHIVYLSFIIAILWTIFSFILCYFGLKIRKYHKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g1987.t14 PANTHER PTHR43038 ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 3 156 8.0E-47
4 g1987.t14 PANTHER PTHR43038:SF2 RH61964P 3 156 8.0E-47
3 g1987.t14 PANTHER PTHR43038 ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 156 227 8.0E-47
5 g1987.t14 PANTHER PTHR43038:SF2 RH61964P 156 227 8.0E-47
1 g1987.t14 Pfam PF12698 ABC-2 family transporter protein 17 152 4.5E-9
12 g1987.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 52 -
19 g1987.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 53 77 -
15 g1987.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 78 96 -
20 g1987.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 97 124 -
10 g1987.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 125 135 -
17 g1987.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 136 163 -
14 g1987.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 164 168 -
18 g1987.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 190 -
11 g1987.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 191 201 -
16 g1987.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 202 223 -
13 g1987.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 224 231 -
7 g1987.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -
9 g1987.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 139 161 -
8 g1987.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -
6 g1987.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 200 222 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values