General information for g2002.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2002 is located on chr_3: 14360551..14360998 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2002 | g2002.t20 | TTS | g2002.t20 | 14358445 | 14358445 |
| chr_3 | g2002 | g2002.t20 | isoform | g2002.t20 | 14358582 | 14360372 |
| chr_3 | g2002 | g2002.t20 | exon | g2002.t20.exon1 | 14358582 | 14358882 |
| chr_3 | g2002 | g2002.t20 | cds | g2002.t20.CDS1 | 14358582 | 14358882 |
| chr_3 | g2002 | g2002.t20 | exon | g2002.t20.exon2 | 14358943 | 14359821 |
| chr_3 | g2002 | g2002.t20 | cds | g2002.t20.CDS2 | 14358943 | 14359821 |
| chr_3 | g2002 | g2002.t20 | exon | g2002.t20.exon3 | 14359884 | 14360043 |
| chr_3 | g2002 | g2002.t20 | cds | g2002.t20.CDS3 | 14359884 | 14360043 |
| chr_3 | g2002 | g2002.t20 | exon | g2002.t20.exon4 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t20 | cds | g2002.t20.CDS4 | 14360097 | 14360202 |
| chr_3 | g2002 | g2002.t20 | exon | g2002.t20.exon5 | 14360343 | 14360372 |
| chr_3 | g2002 | g2002.t20 | TSS | g2002.t20 | 14361190 | 14361190 |
Sequences
>g2002.t20 Gene=g2002 Length=1510
AACAACAGCACCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTTGTCAG
CGGAATGGATGTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGACCTCT
TGATGAAGCAAAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGACAAGAAAGA
GAAGAAGAAAAAGAAGAAAGCTGCCAAAAGTGATTCTTCTGAGAGTGAATCTGATTCGTC
TTCAGATTCTTCATCATCATCTGAGGAGGAAAAGCGAAAAAAGAAGAAAAAACATAAGAA
AAAGTCCAAAAAAGCTTCTAAAAAGAAGGACGATGATTCATCGTCGATTGAAGAAGGTGA
GCTTAAATCTGATACAGAAGCCATAAATCCAATGGTATCTGTTACAAAAATTGATCCCAA
AGAAATTCCTGAAGTCAATAATAAGTTTTTAATGCGCGCTGAGAGACCTCGAGATAATGA
TGGTGATGATAACAATGGATATGAGAAACGCAGACGTGATAGTGATCGTGGTGGTGAAAG
AACTTTTGGCTGGTCGAAAAAGAGAGTTCCTCAATCAAGAAGTGGCCGAGTAATAAAAGG
TCGTGGAAATTTTCGTTATCGAACTCCTGTCAGGTCTCGTTCACGTTCTTTTACGCCAGA
GCATTGGAAAGCAGCTCAACGTAAATTAATAAAAATGTCAGAGTTTGAAAAAATGGAAGA
AAAAAAGAAAGAGAAAGAAGATGAAATTAAGAGACGTGCTGAGGAAAGAAAGCGACGACA
TGAAGCAATAGCTAAGGGTGATGGTAAAAAGTCATTTTTTGAATTAAATCAAGAAATTAC
TGTTGCTCCTGTTAATGTTGTTGCTCCTGAGATTTCAAAAGAACCAACTGATAAAACTAT
CAACGATGAACTGGACTATGAAGCTGATGAGGCAGAAGAAATTGATGAAAAGAAGAAGGA
TGAAGTAATCAAAAAGGATCGAGATGATAAATTTAAATCTGAAAGGGTAAAGAATCGTAG
TAGATCGCGTTCACGTTCCCGTGATTTTGATCGACATAATCGAGATAGAGATAATCGACG
AAATAGAAGAGATTTTCGTGATCGACGAGTTTTTGATGATAGAAATAGAAATCGTTTTGA
CCGTTTTACACGCAGAGATGATCGAGACAGGTATAATCGTCGTAGAAGTCGTAGTAGATC
GCGCAGTCGTAATAACAACAGACGCCGTTCAAATGAGAGACGATTCTCAAAATCACCCAG
GAAGTCAACAAATGATGACAGAAAATCGAAGCGTGATGAAAAAGAGAAAAGTCCAAAAAT
TGACATAAATGAAAAAGAAATTGATGAATTACAGCGTAAAGTTTTTGAAGCAAAACGAGT
ATTAGAAATAATGGTTAAAGAGAAAGAGGAAGAAATGCAGAGAGATGAAAAGAAAAAGCG
TTCTAAATCAAGATCAGTTTCTGATAGAAGACAACGAAGATCGAAAAAGTATTCTGATTC
ATCGGATTAA
>g2002.t20 Gene=g2002 Length=481
MDVVKQIENLPVDRNSRPLDEAKVKACGELVKQVKDKKEKKKKKKAAKSDSSESESDSSS
DSSSSSEEEKRKKKKKHKKKSKKASKKKDDDSSSIEEGELKSDTEAINPMVSVTKIDPKE
IPEVNNKFLMRAERPRDNDGDDNNGYEKRRRDSDRGGERTFGWSKKRVPQSRSGRVIKGR
GNFRYRTPVRSRSRSFTPEHWKAAQRKLIKMSEFEKMEEKKKEKEDEIKRRAEERKRRHE
AIAKGDGKKSFFELNQEITVAPVNVVAPEISKEPTDKTINDELDYEADEAEEIDEKKKDE
VIKKDRDDKFKSERVKNRSRSRSRSRDFDRHNRDRDNRRNRRDFRDRRVFDDRNRNRFDR
FTRRDDRDRYNRRRSRSRSRSRNNNRRRSNERRFSKSPRKSTNDDRKSKRDEKEKSPKID
INEKEIDELQRKVFEAKRVLEIMVKEKEEEMQRDEKKKRSKSRSVSDRRQRRSKKYSDSS
D
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g2002.t20 | Coils | Coil | Coil | 214 | 237 | - |
| 16 | g2002.t20 | Coils | Coil | Coil | 419 | 464 | - |
| 5 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 202 | - |
| 9 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 36 | - |
| 13 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 103 | - |
| 10 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 162 | - |
| 4 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 246 | - |
| 3 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 347 | - |
| 8 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 347 | - |
| 14 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 423 | - |
| 11 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 387 | - |
| 7 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 423 | - |
| 6 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 481 | - |
| 12 | g2002.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 461 | - |
| 1 | g2002.t20 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 2 | 238 | 1.8E-29 |
| 2 | g2002.t20 | PANTHER | PTHR11071:SF292 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE G | 2 | 238 | 1.8E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01802 (peptidylprolyl isomerase)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
