General information for g2002.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2002 is located on chr_3: 14360551..14360998 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2002 | g2002.t23 | TTS | g2002.t23 | 14358445 | 14358445 |
| chr_3 | g2002 | g2002.t23 | isoform | g2002.t23 | 14358582 | 14360998 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon1 | 14358582 | 14358882 |
| chr_3 | g2002 | g2002.t23 | cds | g2002.t23.CDS1 | 14358582 | 14358882 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon2 | 14358943 | 14359821 |
| chr_3 | g2002 | g2002.t23 | cds | g2002.t23.CDS2 | 14358943 | 14359760 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon3 | 14359884 | 14360026 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon4 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon5 | 14360343 | 14360731 |
| chr_3 | g2002 | g2002.t23 | exon | g2002.t23.exon6 | 14360828 | 14360998 |
| chr_3 | g2002 | g2002.t23 | TSS | g2002.t23 | 14361190 | 14361190 |
Sequences
>g2002.t23 Gene=g2002 Length=2023
ATGAGTAAATCAAGGTGTTTTTTTGATGTTACAATATCAAATGCCGATTGCGGTAGAATT
GTTTTTGAGTTATTTTCTGATATTTGTCCTAAAACGTGTGAAAATTTTCGGCAATTGTGT
ACTGGTGAAGCGGGTAATGGGAAACTGAGTCAAAAGCCTTTGTATTATAAAGGCATAATT
TTTCATAGAGTTGTAAAGAACTTTATGGTTCAAAGTGGAGATTTTGTTAATTTCAATGGA
ACAGGAGGAGAATCGATTTATGGGAAGACCTTTGAGGATGAGAACTTTACTCTCAAGCAT
GATAAGCCATTTCTACTTTCTATGGCAAATCGAGGGAAAGACACAAACAGTTCTCAATTT
TTTATGTGAGTGACAACATAAGGCGAAAAATCAAACAGATGTGTGCGAGCACACATTCTT
ACACGATGGAAGAGCCGATACTAAAGTGGCGGCGCACTTTTTTTATATGACTTTGAATGA
TTTCTCTATATATGCAATGTTCCCATTCTCTCTCTTTCGTTTTTCTGCAGAACAACAGCA
CCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTTGTCAGCGGAATGGAT
GTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGACCTCTTGATGAAGCA
AAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGAAAAAGAAGAAAGCTGCCAA
AAGTGATTCTTCTGAGAGTGAATCTGATTCGTCTTCAGATTCTTCATCATCATCTGAGGA
GGAAAAGCGAAAAAAGAAGAAAAAACATAAGAAAAAGTCCAAAAAAGCTTCTAAAAAGAA
GGACGATGATTCATCGTCGATTGAAGAAGGTGAGCTTAAATCTGATACAGAAGCCATAAA
TCCAATGGTATCTGTTACAAAAATTGATCCCAAAGAAATTCCTGAAGTCAATAATAAGTT
TTTAATGCGCGCTGAGAGACCTCGAGATAATGATGGTGATGATAACAATGGATATGAGAA
ACGCAGACGTGATAGTGATCGTGGTGGTGAAAGAACTTTTGGCTGGTCGAAAAAGAGAGT
TCCTCAATCAAGAAGTGGCCGAGTAATAAAAGGTCGTGGAAATTTTCGTTATCGAACTCC
TGTCAGGTCTCGTTCACGTTCTTTTACGCCAGAGCATTGGAAAGCAGCTCAACGTAAATT
AATAAAAATGTCAGAGTTTGAAAAAATGGAAGAAAAAAAGAAAGAGAAAGAAGATGAAAT
TAAGAGACGTGCTGAGGAAAGAAAGCGACGACATGAAGCAATAGCTAAGGGTGATGGTAA
AAAGTCATTTTTTGAATTAAATCAAGAAATTACTGTTGCTCCTGTTAATGTTGTTGCTCC
TGAGATTTCAAAAGAACCAACTGATAAAACTATCAACGATGAACTGGACTATGAAGCTGA
TGAGGCAGAAGAAATTGATGAAAAGAAGAAGGATGAAGTAATCAAAAAGGATCGAGATGA
TAAATTTAAATCTGAAAGGGTAAAGAATCGTAGTAGATCGCGTTCACGTTCCCGTGATTT
TGATCGACATAATCGAGATAGAGATAATCGACGAAATAGAAGAGATTTTCGTGATCGACG
AGTTTTTGATGATAGAAATAGAAATCGTTTTGACCGTTTTACACGCAGAGATGATCGAGA
CAGGTATAATCGTCGTAGAAGTCGTAGTAGATCGCGCAGTCGTAATAACAACAGACGCCG
TTCAAATGAGAGACGATTCTCAAAATCACCCAGGAAGTCAACAAATGATGACAGAAAATC
GAAGCGTGATGAAAAAGAGAAAAGTCCAAAAATTGACATAAATGAAAAAGAAATTGATGA
ATTACAGCGTAAAGTTTTTGAAGCAAAACGAGTATTAGAAATAATGGTTAAAGAGAAAGA
GGAAGAAATGCAGAGAGATGAAAAGAAAAAGCGTTCTAAATCAAGATCAGTTTCTGATAG
AAGACAACGAAGATCGAAAAAGTATTCTGATTCATCGGATTAA
>g2002.t23 Gene=g2002 Length=372
MVSVTKIDPKEIPEVNNKFLMRAERPRDNDGDDNNGYEKRRRDSDRGGERTFGWSKKRVP
QSRSGRVIKGRGNFRYRTPVRSRSRSFTPEHWKAAQRKLIKMSEFEKMEEKKKEKEDEIK
RRAEERKRRHEAIAKGDGKKSFFELNQEITVAPVNVVAPEISKEPTDKTINDELDYEADE
AEEIDEKKKDEVIKKDRDDKFKSERVKNRSRSRSRSRDFDRHNRDRDNRRNRRDFRDRRV
FDDRNRNRFDRFTRRDDRDRYNRRRSRSRSRSRNNNRRRSNERRFSKSPRKSTNDDRKSK
RDEKEKSPKIDINEKEIDELQRKVFEAKRVLEIMVKEKEEEMQRDEKKKRSKSRSVSDRR
QRRSKKYSDSSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g2002.t23 | Coils | Coil | Coil | 105 | 128 | - |
| 12 | g2002.t23 | Coils | Coil | Coil | 310 | 355 | - |
| 7 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - |
| 10 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 53 | - |
| 3 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 133 | - |
| 6 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 238 | - |
| 9 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 238 | - |
| 2 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 314 | - |
| 1 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - |
| 5 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 314 | - |
| 4 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 372 | - |
| 8 | g2002.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 352 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01802 (peptidylprolyl isomerase)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
