General information for g2002.t25
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2002 is located on chr_3: 14360551..14360998 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2002 | g2002.t25 | TTS | g2002.t25 | 14358445 | 14358445 |
| chr_3 | g2002 | g2002.t25 | isoform | g2002.t25 | 14359387 | 14360998 |
| chr_3 | g2002 | g2002.t25 | exon | g2002.t25.exon1 | 14359387 | 14359821 |
| chr_3 | g2002 | g2002.t25 | cds | g2002.t25.CDS1 | 14359389 | 14359821 |
| chr_3 | g2002 | g2002.t25 | exon | g2002.t25.exon2 | 14359884 | 14360043 |
| chr_3 | g2002 | g2002.t25 | cds | g2002.t25.CDS2 | 14359884 | 14360043 |
| chr_3 | g2002 | g2002.t25 | exon | g2002.t25.exon3 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t25 | cds | g2002.t25.CDS3 | 14360097 | 14360202 |
| chr_3 | g2002 | g2002.t25 | exon | g2002.t25.exon4 | 14360343 | 14360731 |
| chr_3 | g2002 | g2002.t25 | exon | g2002.t25.exon5 | 14360828 | 14360998 |
| chr_3 | g2002 | g2002.t25 | TSS | g2002.t25 | 14361190 | 14361190 |
Sequences
>g2002.t25 Gene=g2002 Length=1295
ATGAGTAAATCAAGGTGTTTTTTTGATGTTACAATATCAAATGCCGATTGCGGTAGAATT
GTTTTTGAGTTATTTTCTGATATTTGTCCTAAAACGTGTGAAAATTTTCGGCAATTGTGT
ACTGGTGAAGCGGGTAATGGGAAACTGAGTCAAAAGCCTTTGTATTATAAAGGCATAATT
TTTCATAGAGTTGTAAAGAACTTTATGGTTCAAAGTGGAGATTTTGTTAATTTCAATGGA
ACAGGAGGAGAATCGATTTATGGGAAGACCTTTGAGGATGAGAACTTTACTCTCAAGCAT
GATAAGCCATTTCTACTTTCTATGGCAAATCGAGGGAAAGACACAAACAGTTCTCAATTT
TTTATGTGAGTGACAACATAAGGCGAAAAATCAAACAGATGTGTGCGAGCACACATTCTT
ACACGATGGAAGAGCCGATACTAAAGTGGCGGCGCACTTTTTTTATATGACTTTGAATGA
TTTCTCTATATATGCAATGTTCCCATTCTCTCTCTTTCGTTTTTCTGCAGAACAACAGCA
CCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTTGTCAGCGGAATGGAT
GTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGACCTCTTGATGAAGCA
AAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGACAAGAAAGAGAAGAAGAAA
AAGAAGAAAGCTGCCAAAAGTGATTCTTCTGAGAGTGAATCTGATTCGTCTTCAGATTCT
TCATCATCATCTGAGGAGGAAAAGCGAAAAAAGAAGAAAAAACATAAGAAAAAGTCCAAA
AAAGCTTCTAAAAAGAAGGACGATGATTCATCGTCGATTGAAGAAGGTGAGCTTAAATCT
GATACAGAAGCCATAAATCCAATGGTATCTGTTACAAAAATTGATCCCAAAGAAATTCCT
GAAGTCAATAATAAGTTTTTAATGCGCGCTGAGAGACCTCGAGATAATGATGGTGATGAT
AACAATGGATATGAGAAACGCAGACGTGATAGTGATCGTGGTGGTGAAAGAACTTTTGGC
TGGTCGAAAAAGAGAGTTCCTCAATCAAGAAGTGGCCGAGTAATAAAAGGTCGTGGAAAT
TTTCGTTATCGAACTCCTGTCAGGTCTCGTTCACGTTCTTTTACGCCAGAGCATTGGAAA
GCAGCTCAACGTAAATTAATAAAAATGTCAGAGTTTGAAAAAATGGAAGAAAAAAAGAAA
GAGAAAGAAGATGAAATTAAGAGACGTGCTGAGGA
>g2002.t25 Gene=g2002 Length=233
MDVVKQIENLPVDRNSRPLDEAKVKACGELVKQVKDKKEKKKKKKAAKSDSSESESDSSS
DSSSSSEEEKRKKKKKHKKKSKKASKKKDDDSSSIEEGELKSDTEAINPMVSVTKIDPKE
IPEVNNKFLMRAERPRDNDGDDNNGYEKRRRDSDRGGERTFGWSKKRVPQSRSGRVIKGR
GNFRYRTPVRSRSRSFTPEHWKAAQRKLIKMSEFEKMEEKKKEKEDEIKRRAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2002.t25 | Coils | Coil | Coil | 214 | 233 | - |
| 6 | g2002.t25 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 201 | - |
| 4 | g2002.t25 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 36 | - |
| 5 | g2002.t25 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 103 | - |
| 3 | g2002.t25 | MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 162 | - |
| 1 | g2002.t25 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 2 | 221 | 8.3E-32 |
| 2 | g2002.t25 | PANTHER | PTHR11071:SF292 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE G | 2 | 221 | 8.3E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
