General information for g2002.t27
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2002 is located on chr_3: 14360551..14360998 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2002 | g2002.t27 | TTS | g2002.t27 | 14358445 | 14358445 |
| chr_3 | g2002 | g2002.t27 | isoform | g2002.t27 | 14359387 | 14360998 |
| chr_3 | g2002 | g2002.t27 | exon | g2002.t27.exon1 | 14359387 | 14359821 |
| chr_3 | g2002 | g2002.t27 | cds | g2002.t27.CDS1 | 14359389 | 14359821 |
| chr_3 | g2002 | g2002.t27 | exon | g2002.t27.exon2 | 14359884 | 14360034 |
| chr_3 | g2002 | g2002.t27 | cds | g2002.t27.CDS2 | 14359884 | 14360034 |
| chr_3 | g2002 | g2002.t27 | exon | g2002.t27.exon3 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t27 | cds | g2002.t27.CDS3 | 14360097 | 14360202 |
| chr_3 | g2002 | g2002.t27 | exon | g2002.t27.exon4 | 14360343 | 14360731 |
| chr_3 | g2002 | g2002.t27 | exon | g2002.t27.exon5 | 14360828 | 14360998 |
| chr_3 | g2002 | g2002.t27 | TSS | g2002.t27 | 14361190 | 14361190 |
Sequences
>g2002.t27 Gene=g2002 Length=1286
ATGAGTAAATCAAGGTGTTTTTTTGATGTTACAATATCAAATGCCGATTGCGGTAGAATT
GTTTTTGAGTTATTTTCTGATATTTGTCCTAAAACGTGTGAAAATTTTCGGCAATTGTGT
ACTGGTGAAGCGGGTAATGGGAAACTGAGTCAAAAGCCTTTGTATTATAAAGGCATAATT
TTTCATAGAGTTGTAAAGAACTTTATGGTTCAAAGTGGAGATTTTGTTAATTTCAATGGA
ACAGGAGGAGAATCGATTTATGGGAAGACCTTTGAGGATGAGAACTTTACTCTCAAGCAT
GATAAGCCATTTCTACTTTCTATGGCAAATCGAGGGAAAGACACAAACAGTTCTCAATTT
TTTATGTGAGTGACAACATAAGGCGAAAAATCAAACAGATGTGTGCGAGCACACATTCTT
ACACGATGGAAGAGCCGATACTAAAGTGGCGGCGCACTTTTTTTATATGACTTTGAATGA
TTTCTCTATATATGCAATGTTCCCATTCTCTCTCTTTCGTTTTTCTGCAGAACAACAGCA
CCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTTGTCAGCGGAATGGAT
GTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGACCTCTTGATGAAGCA
AAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGAGAAGAAGAAAAAGAAGAAA
GCTGCCAAAAGTGATTCTTCTGAGAGTGAATCTGATTCGTCTTCAGATTCTTCATCATCA
TCTGAGGAGGAAAAGCGAAAAAAGAAGAAAAAACATAAGAAAAAGTCCAAAAAAGCTTCT
AAAAAGAAGGACGATGATTCATCGTCGATTGAAGAAGGTGAGCTTAAATCTGATACAGAA
GCCATAAATCCAATGGTATCTGTTACAAAAATTGATCCCAAAGAAATTCCTGAAGTCAAT
AATAAGTTTTTAATGCGCGCTGAGAGACCTCGAGATAATGATGGTGATGATAACAATGGA
TATGAGAAACGCAGACGTGATAGTGATCGTGGTGGTGAAAGAACTTTTGGCTGGTCGAAA
AAGAGAGTTCCTCAATCAAGAAGTGGCCGAGTAATAAAAGGTCGTGGAAATTTTCGTTAT
CGAACTCCTGTCAGGTCTCGTTCACGTTCTTTTACGCCAGAGCATTGGAAAGCAGCTCAA
CGTAAATTAATAAAAATGTCAGAGTTTGAAAAAATGGAAGAAAAAAAGAAAGAGAAAGAA
GATGAAATTAAGAGACGTGCTGAGGA
>g2002.t27 Gene=g2002 Length=230
MDVVKQIENLPVDRNSRPLDEAKVKACGELVKQVKEKKKKKKAAKSDSSESESDSSSDSS
SSSEEEKRKKKKKHKKKSKKASKKKDDDSSSIEEGELKSDTEAINPMVSVTKIDPKEIPE
VNNKFLMRAERPRDNDGDDNNGYEKRRRDSDRGGERTFGWSKKRVPQSRSGRVIKGRGNF
RYRTPVRSRSRSFTPEHWKAAQRKLIKMSEFEKMEEKKKEKEDEIKRRAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2002.t27 | Coils | Coil | Coil | 211 | 230 | - |
| 4 | g2002.t27 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 198 | - |
| 6 | g2002.t27 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 34 | - |
| 5 | g2002.t27 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - |
| 3 | g2002.t27 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 159 | - |
| 1 | g2002.t27 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 2 | 218 | 4.5E-31 |
| 2 | g2002.t27 | PANTHER | PTHR11071:SF292 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE G | 2 | 218 | 4.5E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed