General information for g2002.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase G.
Parent gene
- The parent gene g2002 is located on chr_3: 14360551..14360998 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2002 | g2002.t28 | TTS | g2002.t28 | 14358445 | 14358445 |
| chr_3 | g2002 | g2002.t28 | isoform | g2002.t28 | 14359387 | 14360998 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon1 | 14359387 | 14359821 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon2 | 14359884 | 14360032 |
| chr_3 | g2002 | g2002.t28 | cds | g2002.t28.CDS1 | 14360001 | 14360032 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon3 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t28 | cds | g2002.t28.CDS2 | 14360097 | 14360236 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon4 | 14360343 | 14360372 |
| chr_3 | g2002 | g2002.t28 | cds | g2002.t28.CDS3 | 14360343 | 14360372 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon5 | 14360538 | 14360731 |
| chr_3 | g2002 | g2002.t28 | cds | g2002.t28.CDS4 | 14360538 | 14360731 |
| chr_3 | g2002 | g2002.t28 | exon | g2002.t28.exon6 | 14360828 | 14360998 |
| chr_3 | g2002 | g2002.t28 | cds | g2002.t28.CDS5 | 14360828 | 14360998 |
| chr_3 | g2002 | g2002.t28 | TSS | g2002.t28 | 14361190 | 14361190 |
Sequences
>g2002.t28 Gene=g2002 Length=1119
ATGAGTAAATCAAGGTGTTTTTTTGATGTTACAATATCAAATGCCGATTGCGGTAGAATT
GTTTTTGAGTTATTTTCTGATATTTGTCCTAAAACGTGTGAAAATTTTCGGCAATTGTGT
ACTGGTGAAGCGGGTAATGGGAAACTGAGTCAAAAGCCTTTGTATTATAAAGGCATAATT
TTTCATAGAGTTGTAAAGAACTTTATGGTTCAAAGTGGAGATTTTGTTAATTTCAATGGA
ACAGGAGGAGAATCGATTTATGGGAAGACCTTTGAGGATGAGAACTTTACTCTCAAGCAT
GATAAGCCATTTCTACTTTCTATGGCAAATCGAGGGAAAGACACAAACAGTTCTCAATTT
TTTATAACAACAGCACCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTT
GTCAGCGGAATGGATGTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGA
CCTCTTGATGAAGCAAAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGAAGAA
GAAAAAGAAGAAAGCTGCCAAAAGTGATTCTTCTGAGAGTGAATCTGATTCGTCTTCAGA
TTCTTCATCATCATCTGAGGAGGAAAAGCGAAAAAAGAAGAAAAAACATAAGAAAAAGTC
CAAAAAAGCTTCTAAAAAGAAGGACGATGATTCATCGTCGATTGAAGAAGGTGAGCTTAA
ATCTGATACAGAAGCCATAAATCCAATGGTATCTGTTACAAAAATTGATCCCAAAGAAAT
TCCTGAAGTCAATAATAAGTTTTTAATGCGCGCTGAGAGACCTCGAGATAATGATGGTGA
TGATAACAATGGATATGAGAAACGCAGACGTGATAGTGATCGTGGTGGTGAAAGAACTTT
TGGCTGGTCGAAAAAGAGAGTTCCTCAATCAAGAAGTGGCCGAGTAATAAAAGGTCGTGG
AAATTTTCGTTATCGAACTCCTGTCAGGTCTCGTTCACGTTCTTTTACGCCAGAGCATTG
GAAAGCAGCTCAACGTAAATTAATAAAAATGTCAGAGTTTGAAAAAATGGAAGAAAAAAA
GAAAGAGAAAGAAGATGAAATTAAGAGACGTGCTGAGGA
>g2002.t28 Gene=g2002 Length=188
MSKSRCFFDVTISNADCGRIVFELFSDICPKTCENFRQLCTGEAGNGKLSQKPLYYKGII
FHRVVKNFMVQSGDFVNFNGTGGESIYGKTFEDENFTLKHDKPFLLSMANRGKDTNSSQF
FITTAPASHLDGIHTVFGRVVSGMDVVKQIENLPVDRNSRPLDEAKVKACGELVKQVKEE
EKEESCQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2002.t28 | Gene3D | G3DSA:2.40.100.10 | - | 1 | 173 | 0.000 |
| 2 | g2002.t28 | PANTHER | PTHR11071:SF328 | MOCA-CYP, ISOFORM A | 1 | 184 | 0.000 |
| 3 | g2002.t28 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 184 | 0.000 |
| 12 | g2002.t28 | PIRSF | PIRSF001467 | Peptidylpro_ismrse | 1 | 178 | 0.000 |
| 8 | g2002.t28 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 24 | 39 | 0.000 |
| 4 | g2002.t28 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 61 | 73 | 0.000 |
| 6 | g2002.t28 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 104 | 119 | 0.000 |
| 7 | g2002.t28 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 119 | 131 | 0.000 |
| 5 | g2002.t28 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 132 | 147 | 0.000 |
| 1 | g2002.t28 | Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 10 | 171 | 0.000 |
| 11 | g2002.t28 | ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 172 | 41.744 |
| 9 | g2002.t28 | SUPERFAMILY | SSF50891 | Cyclophilin-like | 3 | 174 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0000413 | protein peptidyl-prolyl isomerization | BP |
KEGG
Orthology
- This transcript has been annotated with K09566 (peptidyl-prolyl isomerase G (cyclophilin G))
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed