Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Peptidyl-prolyl cis-trans isomerase G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2002 g2002.t31 TTS g2002.t31 14359433 14359433
chr_3 g2002 g2002.t31 isoform g2002.t31 14359911 14360998
chr_3 g2002 g2002.t31 exon g2002.t31.exon1 14359911 14360043
chr_3 g2002 g2002.t31 exon g2002.t31.exon2 14360097 14360236
chr_3 g2002 g2002.t31 exon g2002.t31.exon3 14360343 14360731
chr_3 g2002 g2002.t31 cds g2002.t31.CDS1 14360534 14360731
chr_3 g2002 g2002.t31 exon g2002.t31.exon4 14360828 14360998
chr_3 g2002 g2002.t31 cds g2002.t31.CDS2 14360828 14360998
chr_3 g2002 g2002.t31 TSS g2002.t31 14361190 14361190

Sequences

>g2002.t31 Gene=g2002 Length=833
ATGAGTAAATCAAGGTGTTTTTTTGATGTTACAATATCAAATGCCGATTGCGGTAGAATT
GTTTTTGAGTTATTTTCTGATATTTGTCCTAAAACGTGTGAAAATTTTCGGCAATTGTGT
ACTGGTGAAGCGGGTAATGGGAAACTGAGTCAAAAGCCTTTGTATTATAAAGGCATAATT
TTTCATAGAGTTGTAAAGAACTTTATGGTTCAAAGTGGAGATTTTGTTAATTTCAATGGA
ACAGGAGGAGAATCGATTTATGGGAAGACCTTTGAGGATGAGAACTTTACTCTCAAGCAT
GATAAGCCATTTCTACTTTCTATGGCAAATCGAGGGAAAGACACAAACAGTTCTCAATTT
TTTATGTGAGTGACAACATAAGGCGAAAAATCAAACAGATGTGTGCGAGCACACATTCTT
ACACGATGGAAGAGCCGATACTAAAGTGGCGGCGCACTTTTTTTATATGACTTTGAATGA
TTTCTCTATATATGCAATGTTCCCATTCTCTCTCTTTCGTTTTTCTGCAGAACAACAGCA
CCTGCTTCACATTTAGATGGAATTCACACTGTCTTTGGTCGAGTTGTCAGCGGAATGGAT
GTTGTAAAACAAATTGAAAATTTACCAGTTGATCGTAATTCGAGACCTCTTGATGAAGCA
AAAGTTAAAGCATGTGGTGAATTAGTTAAACAAGTCAAAGACAAGAAAGAGAAGAAGAAA
AAGAAGAAAGCTGCCAAAAGTGATTCTTCTGAGAGTGAATCTGATTCGTCTTCAGATTCT
TCATCATCATCTGAGGAGGAAAAGCGAAAAAAGAAGAAAAAACATAAGAAAAA

>g2002.t31 Gene=g2002 Length=122
MSKSRCFFDVTISNADCGRIVFELFSDICPKTCENFRQLCTGEAGNGKLSQKPLYYKGII
FHRVVKNFMVQSGDFVNFNGTGGESIYGKTFEDENFTLKHDKPFLLSMANRGKDTNSSQF
FM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2002.t31 Gene3D G3DSA:2.40.100.10 - 1 122 0.000
2 g2002.t31 PANTHER PTHR11071:SF328 MOCA-CYP, ISOFORM A 1 122 0.000
3 g2002.t31 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 122 0.000
11 g2002.t31 PIRSF PIRSF001467 Peptidylpro_ismrse 1 122 0.000
6 g2002.t31 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 0.000
4 g2002.t31 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 0.000
5 g2002.t31 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 0.000
7 g2002.t31 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 122 0.000
1 g2002.t31 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 122 0.000
10 g2002.t31 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 122 30.244
8 g2002.t31 SUPERFAMILY SSF50891 Cyclophilin-like 3 121 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values