General information for g202.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Carboxypeptidase N subunit 2.
Parent gene
- The parent gene g202 is located on chr_3: 1685809..1687107 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g202 | g202.t1 | TSS | g202.t1 | 1685782 | 1685782 |
| chr_3 | g202 | g202.t1 | isoform | g202.t1 | 1685809 | 1687107 |
| chr_3 | g202 | g202.t1 | exon | g202.t1.exon1 | 1685809 | 1687107 |
| chr_3 | g202 | g202.t1 | cds | g202.t1.CDS1 | 1685809 | 1687107 |
| chr_3 | g202 | g202.t1 | TTS | g202.t1 | 1687127 | 1687127 |
Sequences
>g202.t1 Gene=g202 Length=1299
ATGAAGTCAATAAATTTTCTATCTTTTTTAATTTTTCTACCACTTTCATTGTCACAAAAT
GAAACAATTTATTGCATTTATTCGAATGATGAAATAAATGGATACACTTGTGAGTTAGTT
TTGATAAATCCTGATGGTCGTGATGATTTTACAAGAATTAATGGTGAACATTTGGAAAAC
CATTCAAATAGAGATGTAAAGAGAATCATGAGAGGAGATTATTCAGATTCAACGAATTTT
CCATCGATATTATGTGAGAAATTTTTCAATACAATAAGAATTGATGGTTATAGCATTGGA
ATAAGAAAAATTGATATAAATTCTTTTGGAAATTGTAAAGATTTAGAATTTTTGAGCCTT
TATGACAATGAAATAAATGAAATAACCGAAGATGCTTTTACTCATAATACAAAATTAAAT
TTTCTAATTTTGGTGGAAAATAAGTTAAATGGACTCCCTGCGAATGTTTTTGTACCATTG
ACAAAATTAAGAACTTTGTATTTACAAAATAATAATCTTGGTTATGTAAGCAGTTCATTG
TTCCATTCACTAGTAAACCTAGAACTTCTTCATCTTTATGACAATAATTTGAGAGATTTA
CCAGGTGATACTTTTGTTACACTCACAAAACTTCAAAATCTTGCAATAAGTCACAACAAT
CTTTCACAAATAAATCCACAATGGTTCAACACATTAACAAGCTTAGAAGTTTTATATTTA
AACTCAAATAATTTCAGAGAAATTCCTAAAAATGCTTTCAAAAACCTTCAAAGTCTTTGG
ATTTTGTATCTTCATGAAAATAAACTCGAGGATTTGCCAGCAGATATTTTTACTCCACTT
AAGAATTTAGTCTATTTGTACATCAACAACAACAATCTTAAAGTTATTCATTCGGATTCA
TTTGGTCAGTTGCCAAGTTTGCAAAGTCTTCAGTTTTATCGCAATCAAGTTGACCAAATT
GACGAACGTTTTATAGATATCACGGGAATAAAAGAAATCGATGGCAGTTTCAATCCTTGC
ATCGATCGTAATGAGGTCATCAGGGATGAGTCACCATCGAGAAATGAAATTAGAGCAGCA
CTTCAAAGATGCTTTGATAACTATAGGGAGCGTCAAATAACAACTACAACTGAAGAGCCA
CAAGAATGTAAAGTTGATGGTTTAGATGAAAGAGTTTGTCAATTGGAAAGAGAAGTCGAA
AGTTTAAAAAATGAAAATAAGGAAATGAGGTCAAAAATTGACGATTTAAATGCGAGATTA
AAAATTTTAGAAGAGAAAATTTTGTCAATAAAATTTTAA
>g202.t1 Gene=g202 Length=432
MKSINFLSFLIFLPLSLSQNETIYCIYSNDEINGYTCELVLINPDGRDDFTRINGEHLEN
HSNRDVKRIMRGDYSDSTNFPSILCEKFFNTIRIDGYSIGIRKIDINSFGNCKDLEFLSL
YDNEINEITEDAFTHNTKLNFLILVENKLNGLPANVFVPLTKLRTLYLQNNNLGYVSSSL
FHSLVNLELLHLYDNNLRDLPGDTFVTLTKLQNLAISHNNLSQINPQWFNTLTSLEVLYL
NSNNFREIPKNAFKNLQSLWILYLHENKLEDLPADIFTPLKNLVYLYINNNNLKVIHSDS
FGQLPSLQSLQFYRNQVDQIDERFIDITGIKEIDGSFNPCIDRNEVIRDESPSRNEIRAA
LQRCFDNYRERQITTTTEEPQECKVDGLDERVCQLEREVESLKNENKEMRSKIDDLNARL
KILEEKILSIKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g202.t1 | CDD | cd14688 | bZIP_YAP | 357 | 429 | 0.00119646 |
| 15 | g202.t1 | Coils | Coil | Coil | 385 | 426 | - |
| 14 | g202.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 63 | 394 | 1.0E-61 |
| 6 | g202.t1 | PANTHER | PTHR45842:SF11 | - | 101 | 219 | 3.5E-77 |
| 10 | g202.t1 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 101 | 219 | 3.5E-77 |
| 7 | g202.t1 | PANTHER | PTHR45842:SF11 | - | 147 | 244 | 3.5E-77 |
| 11 | g202.t1 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 147 | 244 | 3.5E-77 |
| 5 | g202.t1 | PANTHER | PTHR45842:SF11 | - | 177 | 265 | 3.5E-77 |
| 9 | g202.t1 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 177 | 265 | 3.5E-77 |
| 4 | g202.t1 | PANTHER | PTHR45842:SF11 | - | 212 | 326 | 3.5E-77 |
| 8 | g202.t1 | PANTHER | PTHR45842 | SYNAPTIC ADHESION-LIKE MOLECULE SALM | 212 | 326 | 3.5E-77 |
| 2 | g202.t1 | Pfam | PF13855 | Leucine rich repeat | 116 | 173 | 2.4E-9 |
| 1 | g202.t1 | Pfam | PF13855 | Leucine rich repeat | 210 | 269 | 7.1E-15 |
| 3 | g202.t1 | Pfam | PF00560 | Leucine Rich Repeat | 282 | 303 | 0.95 |
| 17 | g202.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 18 | g202.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 19 | g202.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 13 | - |
| 20 | g202.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 16 | g202.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 432 | - |
| 39 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 114 | 135 | 6.703 |
| 37 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 138 | 159 | 5.317 |
| 38 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 162 | 183 | 6.965 |
| 41 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 186 | 207 | 7.689 |
| 36 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 210 | 231 | 6.657 |
| 35 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 234 | 255 | 7.181 |
| 40 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 258 | 279 | 6.896 |
| 42 | g202.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 282 | 303 | 6.457 |
| 26 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 112 | 135 | 41.0 |
| 34 | g202.t1 | SMART | SM00365 | LRR_sd22_2 | 112 | 133 | 330.0 |
| 25 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 137 | 159 | 160.0 |
| 22 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 160 | 183 | 0.036 |
| 32 | g202.t1 | SMART | SM00365 | LRR_sd22_2 | 160 | 189 | 50.0 |
| 24 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 184 | 207 | 0.03 |
| 29 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 208 | 231 | 6.4 |
| 30 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 232 | 255 | 1.7E-5 |
| 33 | g202.t1 | SMART | SM00365 | LRR_sd22_2 | 232 | 258 | 370.0 |
| 23 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 256 | 279 | 0.0033 |
| 27 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 280 | 303 | 0.082 |
| 31 | g202.t1 | SMART | SM00365 | LRR_sd22_2 | 280 | 301 | 27.0 |
| 28 | g202.t1 | SMART | SM00369 | LRR_typ_2 | 304 | 326 | 67.0 |
| 12 | g202.t1 | SUPERFAMILY | SSF52058 | L domain-like | 85 | 341 | 2.21E-50 |
| 13 | g202.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K08124 (osteomodulin)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed