Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2031 g2031.t3 TSS g2031.t3 14589258 14589258
chr_3 g2031 g2031.t3 isoform g2031.t3 14589657 14590448
chr_3 g2031 g2031.t3 exon g2031.t3.exon1 14589657 14590448
chr_3 g2031 g2031.t3 cds g2031.t3.CDS1 14589728 14590447
chr_3 g2031 g2031.t3 TTS g2031.t3 NA NA

Sequences

>g2031.t3 Gene=g2031 Length=792
AGGCATCAACTGAAGCTAGTGAAGAAAATGCTTTAGTAAAATTTAGTTACTCATTAGAGG
ATCTCTTTGACATGAAATTTCTTGTTCAAAACGCCATCTTCTTATCAGTCAATGTGTTCC
AGCAATATTGTGCGCTCTTTTCTATGGAAAAATTGCTTCAAATCACACCATCATCAATTT
TTCCATCAAATATTGATGATGTGTTATTATTACTGAGAAATCTTGTGATCTTTGACATGA
TTTTTCAAAATAGACTTTTTAAAAATTATTTGGGTCTCTATAGTGATCTCTTACTACAAC
AACAAAGTGATGACGAAAGGCATATCAATTTACAAAATACCATTCATGAGATTGACTTAT
TAATTGATGGAAATATTTTCAATATAGCACTTGACAATATAGTTGCGGTCAAGAACAAAA
TAAAGGCAAGGAATTTAAAACAATTAGAAAATTTTATGTTGACACATATTAAGAATTTGA
TATATGGTATAAATATTCTTGGCAATAATCTCTCTGAATTGAATGACATTGACGAGTTGA
TGAAACTTAATATTGCCGTTATCGTCTATCAAAGGATTTTTCAGAATTTAGATCAAAAAC
ATATGAGACTTGTATCTGACATAAATTATAAATATCCCGCAATTGTAATTCATGGTAATA
TCATGTTAAATGGAAATGAATTCCTTAAACGTTATCTGCAACTTGAGAAGAACAATGTTG
ACATTGAGAAACTTCAGCAAAGTTATCTGAAACAAAGGGTCGATGAAATTAATAAAGATA
CGTTGCAATATT

>g2031.t3 Gene=g2031 Length=240
MKFLVQNAIFLSVNVFQQYCALFSMEKLLQITPSSIFPSNIDDVLLLLRNLVIFDMIFQN
RLFKNYLGLYSDLLLQQQSDDERHINLQNTIHEIDLLIDGNIFNIALDNIVAVKNKIKAR
NLKQLENFMLTHIKNLIYGINILGNNLSELNDIDELMKLNIAVIVYQRIFQNLDQKHMRL
VSDINYKYPAIVIHGNIMLNGNEFLKRYLQLEKNNVDIEKLQQSYLKQRVDEINKDTLQY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g2031.t3 PANTHER PTHR31409 WASH COMPLEX SUBUNIT 4 11 239 0
1 g2031.t3 Pfam PF14745 WASH complex subunit 7, N-terminal 5 240 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0071203 WASH complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed