General information for g2032.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2032 is located on chr_3: 14597215..14600986 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2032 | g2032.t3 | isoform | g2032.t3 | 14597215 | 14599965 |
| chr_3 | g2032 | g2032.t3 | exon | g2032.t3.exon1 | 14597215 | 14597410 |
| chr_3 | g2032 | g2032.t3 | TSS | g2032.t3 | 14597252 | 14597252 |
| chr_3 | g2032 | g2032.t3 | exon | g2032.t3.exon2 | 14597465 | 14597929 |
| chr_3 | g2032 | g2032.t3 | cds | g2032.t3.CDS1 | 14597627 | 14597929 |
| chr_3 | g2032 | g2032.t3 | exon | g2032.t3.exon3 | 14599812 | 14599965 |
| chr_3 | g2032 | g2032.t3 | cds | g2032.t3.CDS2 | 14599812 | 14599964 |
| chr_3 | g2032 | g2032.t3 | TTS | g2032.t3 | NA | NA |
Sequences
>g2032.t3 Gene=g2032 Length=815
ACCAACTTTTAAAACGATAACACCAACATCGCGCACTCAGTTAAAGACATTACTTCAGCG
GGAGCAGTTGTTGCAAGAAGCAGAACGTAAAGAGGCGGAAAGGAAGCGATTAGAACAAGA
ACAAGAAGAGCAGAAAGCAAAATTAGAGTCGCAAAAGGTCCCGCTTGAAGTTGATATTCC
ACCGCAAATCTTGCAAGTCTCGACTCGATTGGCAAATCCCACAAAATATCATGTGATACA
AAAGCAAAAGAATCAAGTGAAACAATATCTAAGTGAATCATTCAAATCATCCGAGTCTTT
GTACAATTTAATTCCATACCCGGTTTTACAACATAGCAACAACAACAACGGCAACACAAT
GGCTGCGCTCGCGACCAAATCGCAACCTGTGACAACATGTAATTCACCGAGTGTTAAGAA
CAACATAAATGCAAAATTACTTAATCATACGGCAATCAAAAATGGCAATTTATTGAGTCA
AAGTGCAAGTGAAATGGCTCACGTTCAAAGTACAGAATATTCGTCTGGGCAATCTAATGG
CAGTTTTCCATTTGTGCTTCAACACCGATATATTGCGGCTGCTAGTCCATCCGAGGTCGC
ATCTTCTGCGATGTCACCAACAATTAGTTCAGTTGCAACCAGTGTGACAGATGCATCCGA
GGCTGACGATTATATTGATGAAATATTAAACTACGAGTCAATAAAATGTGAAATGAATTC
TGAATTAAAAATCAAACAAGAGCCTCAGACACCACAAGGACTTTCACTTTCAGAAGCCGA
AAAGGACAGGCAGAAGAAGGACAATCATAACATGA
>g2032.t3 Gene=g2032 Length=152
MAALATKSQPVTTCNSPSVKNNINAKLLNHTAIKNGNLLSQSASEMAHVQSTEYSSGQSN
GSFPFVLQHRYIAAASPSEVASSAMSPTISSVATSVTDASEADDYIDEILNYESIKCEMN
SELKIKQEPQTPQGLSLSEAEKDRQKKDNHNM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2032.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - |
| 1 | g2032.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 138 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed