General information for g2049.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g2049 is located on chr_3: 14829094..14829944 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2049 | g2049.t9 | isoform | g2049.t9 | 14829094 | 14829944 |
| chr_3 | g2049 | g2049.t9 | exon | g2049.t9.exon1 | 14829094 | 14829541 |
| chr_3 | g2049 | g2049.t9 | cds | g2049.t9.CDS1 | 14829096 | 14829398 |
| chr_3 | g2049 | g2049.t9 | exon | g2049.t9.exon2 | 14829799 | 14829944 |
| chr_3 | g2049 | g2049.t9 | TSS | g2049.t9 | 14830113 | 14830113 |
| chr_3 | g2049 | g2049.t9 | TTS | g2049.t9 | NA | NA |
Sequences
>g2049.t9 Gene=g2049 Length=594
ATGTTGAGAAAGGCTTTGACTCTATCGCTGTGTAAAATTATTAACATCAATACTTTAGAA
GAGCGTACTTTTCAAAAAGAAATTGGCCTAAAATTATGGTGTATTTATGATCCCGAAGGA
GTTGTTTTAAAATTTATCAAAGGCAAAAAATGATAAACATATTAAAAATGGAACCTCAAA
TGAGGAAGAAAGTGAATGTATAGAACTCGAAGTTTTAATTACAAAGAAGACGGTTTTAAA
GAAACAAAAGGATTTACATGTTATTAATACAGCAGATGACATAATATTGATGAAGTTATT
ATCGCAAGATGAAGACAAACAGTTTGATGAGGTTCTTAAAAAAGTGCAAAATGTTAACAA
TTCAGTATTTATTATGAGAACCGAGGACTCCAGTGCGAATCAATATTTTCAATTTTACGG
ATATTTGAGTCAGCAACAAAATATGATGCAAGACTTTGTACGCACGAGCACTTATCAGAA
AGCAATACATAGCAATTCATTTGACTTTGTAGACAGAATAGTGCTCGATGTTGGCGCTGG
TAGCGGCATTCTTTCATTTTTTGCTGCTCAAGCTGGTGCAAAAAAAGTTTATGC
>g2049.t9 Gene=g2049 Length=101
MKLLSQDEDKQFDEVLKKVQNVNNSVFIMRTEDSSANQYFQFYGYLSQQQNMMQDFVRTS
TYQKAIHSNSFDFVDRIVLDVGAGSGILSFFAAQAGAKKVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2049.t9 | CDD | cd02440 | AdoMet_MTases | 78 | 101 | 0.0003223 |
| 5 | g2049.t9 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 17 | 101 | 0.0000000 |
| 2 | g2049.t9 | PANTHER | PTHR11006 | PROTEIN ARGININE N-METHYLTRANSFERASE | 12 | 101 | 0.0000000 |
| 3 | g2049.t9 | PANTHER | PTHR11006:SF51 | HISTONE-ARGININE METHYLTRANSFERASE CARM1 | 12 | 101 | 0.0000000 |
| 1 | g2049.t9 | Pfam | PF06325 | Ribosomal protein L11 methyltransferase (PrmA) | 75 | 101 | 0.0000680 |
| 4 | g2049.t9 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 42 | 101 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed