General information for g2050.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hypoxia up-regulated protein 1 .
Parent gene
- The parent gene g2050 is located on chr_3: 14832875..14833931 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2050 | g2050.t5 | TSS | g2050.t5 | 14830342 | 14830342 |
| chr_3 | g2050 | g2050.t5 | isoform | g2050.t5 | 14830634 | 14831431 |
| chr_3 | g2050 | g2050.t5 | exon | g2050.t5.exon1 | 14830634 | 14830700 |
| chr_3 | g2050 | g2050.t5 | exon | g2050.t5.exon2 | 14830806 | 14830985 |
| chr_3 | g2050 | g2050.t5 | cds | g2050.t5.CDS1 | 14830839 | 14830985 |
| chr_3 | g2050 | g2050.t5 | exon | g2050.t5.exon3 | 14831046 | 14831431 |
| chr_3 | g2050 | g2050.t5 | cds | g2050.t5.CDS2 | 14831046 | 14831429 |
| chr_3 | g2050 | g2050.t5 | TTS | g2050.t5 | 14832363 | 14832363 |
Sequences
>g2050.t5 Gene=g2050 Length=633
ATGCGAGTCTCCACTAGTTTAGTCGTAATTCTATCACTAGCAAGCATTCTCATACAAAAT
GTTTCTGTTATTTTATTAGGTTGGTGTAGTTTCGCCTGGAATGTCTATGGAAATAGCACT
TAATAAGGAATCAAAGAGAAAAACACCTAGTGTTATTGCATTTAGAGAAAAATCTAGATT
TTTCGGTGATGAAGCTATCACACTTGCTGCTAGATTCCCATCAAGTAGCTATGGCTATCT
GCTAGATTATGAGATTGTGCCTGATTCAGTTCGCAATACTGTAAGTTTCAAAAACGGTGA
TGCAGTATATACAATTGAAGAGCTACTTGCTCAATTACTTGAACGTGCACAATTATTCGC
TCAAGATGCAACAGGACAACCGATTCAAGAATGCGTAATAACAGTACCCGGCTTTTTCGG
TCAAGCCGAACGTTTAGCCTTACTTTCCGCTGCCAAATTAGCAAATCTCAAAGTACTACA
ATTGATGAATGATTACTCAGCCGTTGCTCTCAATTACGGCATTTTCCAACGCAAGAATAT
AAATGAGACAGCACACTATGTTATGTTCTATGACATGGGCGCAAGTAAAACCACAGTTTC
AATTGTTAGTTATCAATTAGTAAAAGATAAAGT
>g2050.t5 Gene=g2050 Length=177
MSMEIALNKESKRKTPSVIAFREKSRFFGDEAITLAARFPSSSYGYLLDYEIVPDSVRNT
VSFKNGDAVYTIEELLAQLLERAQLFAQDATGQPIQECVITVPGFFGQAERLALLSAAKL
ANLKVLQLMNDYSAVALNYGIFQRKNINETAHYVMFYDMGASKTTVSIVSYQLVKDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2050.t5 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 46 | 0 |
| 8 | g2050.t5 | Gene3D | G3DSA:3.30.30.30 | - | 50 | 71 | 0 |
| 7 | g2050.t5 | Gene3D | G3DSA:3.30.420.40 | - | 72 | 143 | 0 |
| 6 | g2050.t5 | Gene3D | G3DSA:3.30.420.40 | - | 144 | 172 | 0 |
| 2 | g2050.t5 | PANTHER | PTHR45639:SF3 | HYPOXIA UP-REGULATED PROTEIN 1 | 2 | 173 | 0 |
| 3 | g2050.t5 | PANTHER | PTHR45639 | HSC70CB, ISOFORM G-RELATED | 2 | 173 | 0 |
| 1 | g2050.t5 | Pfam | PF00012 | Hsp70 protein | 50 | 170 | 0 |
| 4 | g2050.t5 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 3 | 142 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed