Gene loci information

Transcript annotation

  • This transcript has been annotated as Hypoxia up-regulated protein 1 .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2050 g2050.t6 TSS g2050.t6 14830342 14830342
chr_3 g2050 g2050.t6 isoform g2050.t6 14830816 14832550
chr_3 g2050 g2050.t6 exon g2050.t6.exon1 14830816 14832550
chr_3 g2050 g2050.t6 cds g2050.t6.CDS1 14830839 14832548
chr_3 g2050 g2050.t6 TTS g2050.t6 14832546 14832546

Sequences

>g2050.t6 Gene=g2050 Length=1735
AGGTTGGTGTAGTTTCGCCTGGAATGTCTATGGAAATAGCACTTAATAAGGAATCAAAGA
GAAAAACACCTAGTGTTATTGCATTTAGAGAAAAATCTAGATTTTTCGGTGATGAAGCTA
TCACACTTGCTGCTAGATTCCCATCAAGTAGCTATGGCTATCTGCTAGATCTTTTAGGAA
AAGATATTTCAAATCCAATTGTTGAATTATATAAAAAAAGATTTCCTTACTATGAGATTG
TGCCTGATTCAGTTCGCAATACTGTAAGTTTCAAAAACGGTGATGCAGTATATACAATTG
AAGAGCTACTTGCTCAATTACTTGAACGTGCACAATTATTCGCTCAAGATGCAACAGGAC
AACCGATTCAAGAATGCGTAATAACAGTACCCGGCTTTTTCGGTCAAGCCGAACGTTTAG
CCTTACTTTCCGCTGCCAAATTAGCAAATCTCAAAGTACTACAATTGATGAATGATTACT
CAGCCGTTGCTCTCAATTACGGCATTTTCCAACGCAAGAATATAAATGAGACAGCACACT
ATGTTATGTTCTATGACATGGGCGCAAGTAAAACCACAGTTTCAATTGTTAGTTATCAAT
TAGTAAAAGATAAAGTATTGCGTGAAACACTTCCAGTTGTACAAATTGTTGGTGTGGGAT
ATGATAGAACATTAGGCGGTTTAGAAATGCAGTTGAGATTGCGTGATTATTTAGCTGATG
CCTTTAATGATATGAAAAAGACAAAACAAAATGTTTATGAAAGTCCACGTGCTATGGCCA
AGTTATTAAAAGAAGCAGGTCGTGTAAAAAATGTATTATCAGCAAATGTAGACCATTATG
CACAAATTGAAGGATTGTTAGATGAGCAAGATTTTAAATTTATGGTTACACGTGAAAAAT
TTGAAGAGCTCTGTGCCGATTTATTTGATCGTGTAGCAGCACCTGTTCAAAAAGCACTCG
ATGCGGCCGGTCTCACAATTGACGTCATAAATCAATTCATTCTTTTTGGAGGAAATACTC
GCACACCAAAAATTCAAGAAATTTTGAAAAAGAAAACCAATATGGAGCTTTCAAAGAATT
TAAATGCTGATGAAGCAGCAACAATGGGTGCTGTTTATCGTGCAGCTGATCTCGCAACAG
GATTTAAAGTGAAAAAGTTTATTGTCAAAGATGCCGTTCTATTTCCAATTAATGTTGTAT
TTGGTCGAGAGGGTGACAATAAGAAATTAGTGACAAGAACTCTTTTTGGACCAATGAATT
CTTATCCACAGAAGAAAGTTATTACATTTAATAAGCATAAACAAGATTTTGGTTTTACAG
TAAATTATGCTGATTTAGATTATTTGGGTGCAAAAGAAGTTTTAAATGTGGGCTCATTAA
ATATCAGCAAAGTCGAGTTGACAAGTGTTACAAAACTATTTGAGGAAAAAATTAAGGAAG
GCATCGATTCGAAAGGAATTAAAGCTCATTTTGCTCTCGATGATTCTGGTGTATTTTCTC
TTGTTAATGTAGAATTAATTTTAGAAAAGGCTGCAGAGAGTGTTGAAGAAAAGGAAGAAG
AAGGTGCATTCAGTAAATTGGGATCAACAATTAGTAAACTATTTGGTGGTGATAAAGAGG
AAGCTCCTGTTGGAACAAATGAAACTGAAAAGGAGAAAACAACAACTGAAGAAGAAACTA
CCACAACACCTATTCCTCCACCCACTGCTGCAAATGATACTGAAAACGATTCAAA

>g2050.t6 Gene=g2050 Length=570
MSMEIALNKESKRKTPSVIAFREKSRFFGDEAITLAARFPSSSYGYLLDLLGKDISNPIV
ELYKKRFPYYEIVPDSVRNTVSFKNGDAVYTIEELLAQLLERAQLFAQDATGQPIQECVI
TVPGFFGQAERLALLSAAKLANLKVLQLMNDYSAVALNYGIFQRKNINETAHYVMFYDMG
ASKTTVSIVSYQLVKDKVLRETLPVVQIVGVGYDRTLGGLEMQLRLRDYLADAFNDMKKT
KQNVYESPRAMAKLLKEAGRVKNVLSANVDHYAQIEGLLDEQDFKFMVTREKFEELCADL
FDRVAAPVQKALDAAGLTIDVINQFILFGGNTRTPKIQEILKKKTNMELSKNLNADEAAT
MGAVYRAADLATGFKVKKFIVKDAVLFPINVVFGREGDNKKLVTRTLFGPMNSYPQKKVI
TFNKHKQDFGFTVNYADLDYLGAKEVLNVGSLNISKVELTSVTKLFEEKIKEGIDSKGIK
AHFALDDSGVFSLVNVELILEKAAESVEEKEEEGAFSKLGSTISKLFGGDKEEAPVGTNE
TEKEKTTTEEETTTTPIPPPTAANDTENDS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g2050.t6 CDD cd10230 HYOU1-like_NBD 3 368 9.00443E-167
15 g2050.t6 Coils Coil Coil 493 513 -
13 g2050.t6 Gene3D G3DSA:3.30.420.40 - 3 368 4.4E-112
14 g2050.t6 Gene3D G3DSA:3.30.420.40 - 165 350 4.4E-112
12 g2050.t6 Gene3D G3DSA:3.90.640.10 Actin; Chain A 218 303 4.4E-112
11 g2050.t6 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 375 521 8.6E-32
17 g2050.t6 MobiDBLite mobidb-lite consensus disorder prediction 527 570 -
19 g2050.t6 MobiDBLite mobidb-lite consensus disorder prediction 535 550 -
18 g2050.t6 MobiDBLite mobidb-lite consensus disorder prediction 551 570 -
2 g2050.t6 PANTHER PTHR45639:SF3 HYPOXIA UP-REGULATED PROTEIN 1 2 553 1.6E-195
3 g2050.t6 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 2 553 1.6E-195
8 g2050.t6 PRINTS PR00301 70kDa heat shock protein signature 10 22 1.3E-17
5 g2050.t6 PRINTS PR00301 70kDa heat shock protein signature 118 138 1.3E-17
6 g2050.t6 PRINTS PR00301 70kDa heat shock protein signature 322 338 1.3E-17
4 g2050.t6 PRINTS PR00301 70kDa heat shock protein signature 353 373 1.3E-17
7 g2050.t6 PRINTS PR00301 70kDa heat shock protein signature 476 492 1.3E-17
1 g2050.t6 Pfam PF00012 Hsp70 protein 3 527 1.6E-78
10 g2050.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 3 162 4.53E-34
9 g2050.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 172 368 5.76E-40

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed