Gene loci information

Transcript annotation

  • This transcript has been annotated as mRNA cap guanine-N7 methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2141 g2141.t5 TTS g2141.t5 15566287 15566287
chr_3 g2141 g2141.t5 isoform g2141.t5 15566457 15567827
chr_3 g2141 g2141.t5 exon g2141.t5.exon1 15566457 15567150
chr_3 g2141 g2141.t5 cds g2141.t5.CDS1 15566547 15567150
chr_3 g2141 g2141.t5 exon g2141.t5.exon2 15567207 15567827
chr_3 g2141 g2141.t5 cds g2141.t5.CDS2 15567207 15567487
chr_3 g2141 g2141.t5 TSS g2141.t5 15567895 15567895

Sequences

>g2141.t5 Gene=g2141 Length=1315
ATGGAAGAATCTATTGTTGCAAGTGATGAAGAATATTTGACAGAAGAGGAAGAACAGCCA
GAACAGAGAGGAATTAAGCGAAAACATGAAGATGACGAAGACGACGAAAGAGAGCAAATA
AATCAAGATGATGAGCAAGAAGGCGGCACTCAAAGTACGAGTCACGATAATTCAATAGTG
GTTGCAAATCATTATAATAAATTACAAGAGAAAGGATTGGCTGAAAGATTTAATTCGAAA
ATTTTCTATTTGAGAAATTTTAATAATTGGATAAAGAGGTAAATAAGAAACATTTTCTTT
TAATTTTATTCAGAATTCTCATATACCTCGAATTTACAGTATGCTTATAAGCGATTATCT
CGAGAAAATTAAAGATTCTATGCAACATGGTTCTCCTTTAAGAGTGTTAGATATGTGTTG
TGGTAAAGGTGGTGATTTGTTAAAGTGGCATAAAGGAAGAATTACTTATTTAATCTGTAC
TGATATTGCTGAGATTAGTATAGAACAGTGTCGTGCACGTTATGAAAAAATTACAGCTAA
TGATCCACCTGAACGTAAATCATTTCAAGCAGAATTTTTCACGGCTGATTCAACAAGAGA
TCGACTTAGGGAACGATATATAGACCCTTCAATAGAACTGAATTTAGTTAGTTGTCAGTT
TGCTTTTCATTATTGTTTCGAATCACCAAAACAAGCAGAGCAAATGCTCAAGAATGTCTC
AGAATGTTTGAAAATAGGTGGTTATTTTATTGGCACTATACCTGATGCAAAAGACATCAT
GAAGCGTCAACGTGCTGCACAATCAGATTCTTTTGGAAATGATGTTTTTAATATAAAATT
TTTGTCAGACCCAGATGATCTCCCAATATTTGGGGCAAAATATAATTTTCATTTAGATGG
TGTTGTTGATTGTCCAGAGTTTCTTGTCTATTTTCCCGCGTTTGTTAAACTTGCTAAACG
TTATAATTTAAAACTTATTGAGAATGTTCGGTTTGAAGATTATTTTCAAATGAAAATTGG
GAAGGGAAGGGGGTTGATTGAAAAAATGCAAGCTGCAGAACGATTTAGTCTTAATGGTAA
TCGTAATTTATCAAGGTCTAATGAAGAAGAATATAAACATGCAAAAGATTTTCTACTTCA
AAAAGGTGGATATGAAAATCGACGTAAATGTGGAACGCTTTCTGCATCTGAATGGGAAGC
AGCATGTAAGTTTTTTTTAAATTAAATTTAATGAACTATTCAAATGATTGAAATTTTCAT
TTTAGCTCTATATATGACATTTGCCTTTCAAAAGGTAAAAGGACCAATTGAATGA

>g2141.t5 Gene=g2141 Length=294
MLISDYLEKIKDSMQHGSPLRVLDMCCGKGGDLLKWHKGRITYLICTDIAEISIEQCRAR
YEKITANDPPERKSFQAEFFTADSTRDRLRERYIDPSIELNLVSCQFAFHYCFESPKQAE
QMLKNVSECLKIGGYFIGTIPDAKDIMKRQRAAQSDSFGNDVFNIKFLSDPDDLPIFGAK
YNFHLDGVVDCPEFLVYFPAFVKLAKRYNLKLIENVRFEDYFQMKIGKGRGLIEKMQAAE
RFSLNGNRNLSRSNEEEYKHAKDFLLQKGGYENRRKCGTLSASEWEAACKFFLN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2141.t5 CDD cd02440 AdoMet_MTases 21 137 0.0000002
2 g2141.t5 PANTHER PTHR12189 MRNA GUANINE-7- METHYLTRANSFERASE 1 291 0.0000000
3 g2141.t5 PANTHER PTHR12189:SF2 MRNA CAP GUANINE-N7 METHYLTRANSFERASE 1 291 0.0000000
6 g2141.t5 PIRSF PIRSF028762 ABD1 1 294 0.0000000
1 g2141.t5 Pfam PF03291 mRNA capping enzyme 1 288 0.0000000
5 g2141.t5 ProSiteProfiles PS51562 mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 1 294 61.1090000
4 g2141.t5 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 5 223 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006370 7-methylguanosine mRNA capping BP
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values