Gene loci information

Transcript annotation

  • This transcript has been annotated as mRNA cap guanine-N7 methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2141 g2141.t8 TTS g2141.t8 15566287 15566287
chr_3 g2141 g2141.t8 isoform g2141.t8 15567005 15567827
chr_3 g2141 g2141.t8 exon g2141.t8.exon1 15567005 15567150
chr_3 g2141 g2141.t8 cds g2141.t8.CDS1 15567006 15567150
chr_3 g2141 g2141.t8 exon g2141.t8.exon2 15567207 15567488
chr_3 g2141 g2141.t8 cds g2141.t8.CDS2 15567207 15567488
chr_3 g2141 g2141.t8 exon g2141.t8.exon3 15567550 15567827
chr_3 g2141 g2141.t8 cds g2141.t8.CDS3 15567550 15567827
chr_3 g2141 g2141.t8 TSS g2141.t8 15567895 15567895

Sequences

>g2141.t8 Gene=g2141 Length=706
ATGGAAGAATCTATTGTTGCAAGTGATGAAGAATATTTGACAGAAGAGGAAGAACAGCCA
GAACAGAGAGGAATTAAGCGAAAACATGAAGATGACGAAGACGACGAAAGAGAGCAAATA
AATCAAGATGATGAGCAAGAAGGCGGCACTCAAAGTACGAGTCACGATAATTCAATAGTG
GTTGCAAATCATTATAATAAATTACAAGAGAAAGGATTGGCTGAAAGATTTAATTCGAAA
ATTTTCTATTTGAGAAATTTTAATAATTGGATAAAGAGTATGCTTATAAGCGATTATCTC
GAGAAAATTAAAGATTCTATGCAACATGGTTCTCCTTTAAGAGTGTTAGATATGTGTTGT
GGTAAAGGTGGTGATTTGTTAAAGTGGCATAAAGGAAGAATTACTTATTTAATCTGTACT
GATATTGCTGAGATTAGTATAGAACAGTGTCGTGCACGTTATGAAAAAATTACAGCTAAT
GATCCACCTGAACGTAAATCATTTCAAGCAGAATTTTTCACGGCTGATTCAACAAGAGAT
CGACTTAGGGAACGATATATAGACCCTTCAATAGAACTGAATTTAGTTAGTTGTCAGTTT
GCTTTTCATTATTGTTTCGAATCACCAAAACAAGCAGAGCAAATGCTCAAGAATGTCTCA
GAATGTTTGAAAATAGGTGGTTATTTTATTGGCACTATACCTGATG

>g2141.t8 Gene=g2141 Length=235
MEESIVASDEEYLTEEEEQPEQRGIKRKHEDDEDDEREQINQDDEQEGGTQSTSHDNSIV
VANHYNKLQEKGLAERFNSKIFYLRNFNNWIKSMLISDYLEKIKDSMQHGSPLRVLDMCC
GKGGDLLKWHKGRITYLICTDIAEISIEQCRARYEKITANDPPERKSFQAEFFTADSTRD
RLRERYIDPSIELNLVSCQFAFHYCFESPKQAEQMLKNVSECLKIGGYFIGTIPD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2141.t8 CDD cd02440 AdoMet_MTases 114 230 7.44724E-8
8 g2141.t8 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 61 235 2.1E-65
6 g2141.t8 MobiDBLite mobidb-lite consensus disorder prediction 1 58 -
7 g2141.t8 MobiDBLite mobidb-lite consensus disorder prediction 1 17 -
5 g2141.t8 MobiDBLite mobidb-lite consensus disorder prediction 18 35 -
2 g2141.t8 PANTHER PTHR12189 MRNA GUANINE-7- METHYLTRANSFERASE 33 235 9.7E-67
3 g2141.t8 PANTHER PTHR12189:SF2 MRNA CAP GUANINE-N7 METHYLTRANSFERASE 33 235 9.7E-67
1 g2141.t8 Pfam PF03291 mRNA capping enzyme 50 235 4.4E-70
9 g2141.t8 ProSiteProfiles PS51562 mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 40 235 50.224
4 g2141.t8 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 80 234 7.54E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values