General information for g2144.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome c-type heme lyase.
Parent gene
- The parent gene g2144 is located on chr_3: 15577745..15578714 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2144 | g2144.t6 | TTS | g2144.t6 | 15576828 | 15576828 |
| chr_3 | g2144 | g2144.t6 | isoform | g2144.t6 | 15576863 | 15577976 |
| chr_3 | g2144 | g2144.t6 | exon | g2144.t6.exon1 | 15576863 | 15577768 |
| chr_3 | g2144 | g2144.t6 | cds | g2144.t6.CDS1 | 15576863 | 15577327 |
| chr_3 | g2144 | g2144.t6 | exon | g2144.t6.exon2 | 15577868 | 15577976 |
| chr_3 | g2144 | g2144.t6 | TSS | g2144.t6 | NA | NA |
Sequences
>g2144.t6 Gene=g2144 Length=1015
TGAGCAAAAATTCTTAGAATCGTAAGGAAAATTTCAGAAACTTTTTGAAATCGAAATTTA
AAAAAAAACCTTATTTTATTAAAGAAATTCAAGTCATAAAAAAGCTAATATCACACATAA
AAATGGGTCAACAAATGTCGATCGCTGTTGCTGCTGAGTCTGTTGTTTCATCACTCGACC
ACTCAAAAATACCAGAAAATCATCCAAAGATTGAAGCTTCACATAAAATTCAAGAAATCC
CACCGGAATGTCCAATGCATCAAAAAAGCAAACCAGAGTCTAAAAAGCAAGAAGCAGTTT
TAGTTTCAGAATGTCCTATTCAAGGTGATATTAATCCACTTAATATGATGCCTCCTGCAA
ATCAACAACCTTCACCCGGTCAACCTTTTCCGCTTCCTACAGAACGTCAATTGTCCTCAA
TCCCTCGCGCTGTACCAAGTAAGTCTAAATTTAACAGTAAATATCAATCACATGTTGATT
ATTGCTTTCTTTTGCATTGCTATTTTTAGGTCCTGATGGTAAAACTTTTTGGGAATATCC
TAGTCAACAAATGTTCTGGAATGCAATGCTTCGTAAAGGCTGGCGATGGAATGACGAAGA
TATTCAAGCAAAAGATATGGACGATATTATAAAAATTCATAATGCTAATAATGAACAAGC
ATGGCAAGAAGTCTTAAAATGGGAGGCTCTTCATGCACGTGAATGCGGCAATCCAAAATT
GAAAAGTTTTGGTGGAAAAGCAAAAGATTTTTCACCTCGAGCAAGAATTCGTCAAATGAT
GGGCTATGAATTACCTTTTGATCGTCATGATTGGATTGTTGATAGATGTGGAAAAGAAGT
CCGTTACGTAATCGATTATTATGATGGAGGAATGGTTGATGAAAAATACAAATTCGCAAT
TCTCGATGTTCGACCTGCTATGGACAGCTTTGAAAATATCTGGGATAGAATGAAAGTCGC
ATATATGCGATGGAAATACGAGTATTTTGACACTGAAACTGATAACAAGAACTAA
>g2144.t6 Gene=g2144 Length=154
MFWNAMLRKGWRWNDEDIQAKDMDDIIKIHNANNEQAWQEVLKWEALHARECGNPKLKSF
GGKAKDFSPRARIRQMMGYELPFDRHDWIVDRCGKEVRYVIDYYDGGMVDEKYKFAILDV
RPAMDSFENIWDRMKVAYMRWKYEYFDTETDNKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2144.t6 | PANTHER | PTHR12743:SF0 | CYTOCHROME C-TYPE HEME LYASE | 1 | 142 | 4.5E-65 |
| 3 | g2144.t6 | PANTHER | PTHR12743 | CYTOCHROME C1 HEME LYASE | 1 | 142 | 4.5E-65 |
| 1 | g2144.t6 | Pfam | PF01265 | Cytochrome c/c1 heme lyase | 1 | 135 | 3.2E-45 |
| 5 | g2144.t6 | ProSitePatterns | PS00821 | Cytochrome c and c1 heme lyases signature 1. | 30 | 45 | - |
| 4 | g2144.t6 | ProSitePatterns | PS00822 | Cytochrome c and c1 heme lyases signature 2. | 82 | 88 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005739 | mitochondrion | CC |
| GO:0004408 | holocytochrome-c synthase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
