General information for g2144.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2144 is located on chr_3: 15577745..15578714 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2144 | g2144.t8 | TTS | g2144.t8 | 15576828 | 15576828 |
| chr_3 | g2144 | g2144.t8 | isoform | g2144.t8 | 15577449 | 15578714 |
| chr_3 | g2144 | g2144.t8 | exon | g2144.t8.exon1 | 15577449 | 15578219 |
| chr_3 | g2144 | g2144.t8 | cds | g2144.t8.CDS1 | 15577450 | 15577755 |
| chr_3 | g2144 | g2144.t8 | exon | g2144.t8.exon2 | 15578283 | 15578369 |
| chr_3 | g2144 | g2144.t8 | exon | g2144.t8.exon3 | 15578430 | 15578714 |
| chr_3 | g2144 | g2144.t8 | TSS | g2144.t8 | NA | NA |
Sequences
>g2144.t8 Gene=g2144 Length=1143
TTAAATGTACTTGAATATTACATCTTTGGGATCTGCTACTGTTTGTAATTCTAATGTGAC
AGGACATTGAAGCCAATATGAAAGCATTTCTTCAGTGTATCCCAAAAGAAAATACATCTT
TCTTGCACTTATACCTTGTTTTATTAAAGCAGCAATACGAATATGATTGAATTGTCGTTT
TATAATAACTTCAGATAGCACAAGTGAATGCCATGTTCCTGTCATAAATTTTCTTATAAA
CATATCCTCTGTAATACATTGTGCTGTTCTCAATTCCCCACGACTATTAGAAGTGTTCCA
TGAATTCCAAGCTTTTCTATGTGCAATAAAATGAGGTGGATTTGCCATTTCATAAGTAAG
AGGTCGATCTCTCTTTTAGGAGTAATTTTATATCGACCCGATTGCACACTACTCAAAGCT
GCTGAAGATCTAAAACCACGAACAATTTGCATTGATATTGGAGCATTTTGCTGTGATTTA
AATAATAAACTATTTATGTATTGATTTCAATAACTTTTATTAATTGTACTCACTTGAATA
ATCGGTAAAAAATTCATTTTGATATTTTTTATTTTCAATGTTTTTAAATGTGCTCAGTTT
TGCTCAATCAAGAACTGAGCAAAAATTCTTAGAATCGTAAGGAAAATTTCAGAAACTTTT
TGAAATCGAAATTTAAAAAAAAACCTTATTTTATTAAAGAAATTCAAGTCATAAAAAAGC
TAATGTAAGTAATAAATATGAAATAAAGTATTTTTTGATTATTTTCATTGAGCATTATCA
ATTTACTTTGATTATACAATCGATTTTCATCACCACATTATAGATCACACATAAAAATGG
GTCAACAAATGTCGATCGCTGTTGCTGCTGAGTCTGTTGTTTCATCACTCGACCACTCAA
AAATACCAGAAAATCATCCAAAGATTGAAGCTTCACATAAAATTCAAGAAATCCCACCGG
AATGTCCAATGCATCAAAAAAGCAAACCAGAGTCTAAAAAGCAAGAAGCAGTTTTAGTTT
CAGAATGTCCTATTCAAGGTGATATTAATCCACTTAATATGATGCCTCCTGCAAATCAAC
AACCTTCACCCGGTCAACCTTTTCCGCTTCCTACAGAACGTCAATTGTCCTCAATCCCTC
GCG
>g2144.t8 Gene=g2144 Length=102
MGQQMSIAVAAESVVSSLDHSKIPENHPKIEASHKIQEIPPECPMHQKSKPESKKQEAVL
VSECPIQGDINPLNMMPPANQQPSPGQPFPLPTERQLSSIPR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g2144.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - |
| 2 | g2144.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 102 | - |
| 1 | g2144.t8 | Pfam | PF01265 | Cytochrome c/c1 heme lyase | 26 | 102 | 2.2E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005739 | mitochondrion | CC |
| GO:0004408 | holocytochrome-c synthase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
