General information for g2146.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein O-GlcNAcase.
Parent gene
- The parent gene g2146 is located on chr_3: 15580763..15581904 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2146 | g2146.t1 | TTS | g2146.t1 | 15578762 | 15578762 |
| chr_3 | g2146 | g2146.t1 | isoform | g2146.t1 | 15578847 | 15581904 |
| chr_3 | g2146 | g2146.t1 | exon | g2146.t1.exon1 | 15578847 | 15579215 |
| chr_3 | g2146 | g2146.t1 | cds | g2146.t1.CDS1 | 15578847 | 15579215 |
| chr_3 | g2146 | g2146.t1 | exon | g2146.t1.exon2 | 15579279 | 15581386 |
| chr_3 | g2146 | g2146.t1 | cds | g2146.t1.CDS2 | 15579279 | 15581386 |
| chr_3 | g2146 | g2146.t1 | exon | g2146.t1.exon3 | 15581461 | 15581522 |
| chr_3 | g2146 | g2146.t1 | cds | g2146.t1.CDS3 | 15581461 | 15581522 |
| chr_3 | g2146 | g2146.t1 | exon | g2146.t1.exon4 | 15581594 | 15581904 |
| chr_3 | g2146 | g2146.t1 | cds | g2146.t1.CDS4 | 15581594 | 15581904 |
| chr_3 | g2146 | g2146.t1 | TSS | g2146.t1 | 15581992 | 15581992 |
Sequences
>g2146.t1 Gene=g2146 Length=2850
ATGTCAAATTCACCACAAAAATTTGGTCAAGACGATGAAGAATCAAGAAAGTTTCTATTG
GGTGTTGTAGAAGGTTTTTATGGCCGGCCTTTTACATCTGAGCAAAGAAAAAATTTATTC
AAAAAATTAAAAAAATTCGGTCATCAGCTGTATATCTATGCACCAAAAGATGATCTAAAG
CATCGAGCTGCATGGAGAGAGTTGTATACAGTTGAAGAAGGAGAGCACCTTCAAGGATTA
ATCAATGCGGCAAAATCATCTGGAATCTTATTTTTCTATGCATTGAGTCCCGGTTTAGAC
ATAACTTACAGTTCATTAAAAGACACCGCTTGTTTGAAGAGAAAACTCGATCAAGTAAAT
CAATTAGGATGTCAAAACTTTGCACTTCTTTTTGATGACATTGATTCTGAAATGTCTAAA
GCGGACAAAGAAATTTTTCAAAGTTTTGCACATGCTCAAGTCTCAGTGTCAAATGAAATT
TACAATCATCTCAGCCGTATTCAGTCAAATTGCTTCAATTTTTTATTTTGTCCAACACAA
TATTGTAGCAGTCGTGCAGTTCCCAATGTCGTTGAAAGCGAATATTTGAATACGATAGGA
CAAAAGTTGCTTCCAAACATTGATATTCTTTGGACTGGCAATAAAGTTATAAGCAAAATC
ATATCTGTAGAGGATGTTTTAGAAATAAATGAAGTGTTAAGAAGGAAAGTAATGATATGG
GACAATCTCCATGCAAACGATTTTGACCAAAAGAGAATTTTTCTTGGACCATATTGTGGA
CGCGATTGCGAATTAATACCTTTATTAAGAGGTGTTGTCACAAACCCAAATTGTGAGTTT
CATGGCAACACAATTGCTATTCATACACTCGCACAATGGAGTAGATGTGAGTCACAAGTC
AACGTAGAATCCATATCTGATATTAAATTAGAAACAGAAAACGATGACTGCGATGAAACT
AAATTAAATTATTTGACTGAAAGAACTTATCATCCACGCGTGGCGCTACAAAATGCAATT
AGAGACTGGCTTGATGACTTTTTTGAAGAGAAAAAAGTTTATGGTAGAATGATAAAACCA
CATCCAGGAAGTGCTTTGACACCAATCGTTATACCACCAATTCCAAAAATTAATACCTGT
ATGTCACTTACACTTCCAACAGCTACCTCTCCTTCATCGAGTGCACCAATATCTGTTCCT
GAAGTTCCTCAATTACAAGCTCTTGCTGAAATTTGTTCAGCAGTGCCCGTATCAAATGAA
GCATTGGTCAAGGCAAGCGTCATGAATTCACTTGTTTCTAACACAAAAGTAGTAACTACT
AATGCAATCAATGCACCATTACTCGCTACAATTGAAAGTAATGTGGACTTGAGTGATAAA
ATTATGCCATCAACTGCAGACATAATGGAAATTGAAAAAGCATCACTCGAAACTGAAGAA
GGAGAAGCAATGGATTGTGGTACACCTAAGCACACTTTATCAGATAATTCAAGCATGAAT
TCTGAACCAACAAAGGAAGAACATGATTCAAGTGGAAATGTAAATGGAAAGAATTTAACT
CCTGATGACAATGATAAAACAGAAAAATCACAATTATCAGATGATGTAGTCATGGTTGAC
TCAAACAATGATCATGAAATCATGCAAGATGAATCTTTATCAGAAGAAGAAAAAAATGAA
CCAATAACTTATGATGATGTATTACTTTTGTGTGATTTATTTTATTTACCATTTGAACAT
GGTAAACAAGGACTGAATCTTTTGAATGAATTTCATTGGCTTAAAATGAATGCATTTGTC
CTGAGCGAAAGAAAAAAGAAATCAAATGATGATTCAACGAATACACAAGAATGGTTGGAT
CGTAGTAAAAACTTCCTAAAGTTATGTGACTCAGTTTATAAACTGATGAGAAAAATTGCA
TTGTGTGTTAACCGAGAAATTGCTTATGATCTTTATACTTATACTTGGGAGATGTCTGCT
GTTGTATCAATTTGTGATTCTTACATCCGTTGGCTAGAGTTAGGAAATTTTCCTCAAAAT
GCAAATTCATTTATTCAAGGAAATTATACATGGTTTTCGAAAGGTTGGAAGGAAACATTC
ATGTCTGGCGAACAGGAACCTTGGATTTTTCGTGGAGGCCTAATCGTTGATATTCAACGA
CTCATTCCGATTGATTCAGCTAACGATTTATTCATTTATCGATTACCAGAAACGACCACA
TTGAATTTTTTCCACGTTCGGCCATATAACTATTTGGATGAATCAGAAGTCTATAAAATT
TGTCACAGGACATGTTTCGATGGAAATGACTGCACAAATTTATTTCCTCAATCTTTGCAA
GATATTGCAGCTGATCGACTTGTTGCACCATTTGTGACACTCAATCCTGAATTTTGCTTA
GTGGTCGAGAATGGTAAAAAAGTTTTGATTGGATATGCATGTGCTGCACTAAATGCGAAA
GATTTTTACCGTAGTCAAGAGACATTATGGCTTCCAATTGCGCGAGAAAAATATCCACTT
TCGCTGTTAGAAATGCCAGAAATTACACCAGCAGCAAAGGATGCAATAAATTGGTTCCAT
AATTTTAAATATGACTGTATTCAAAACGTCCTCCAGCAATATCCATCGATTGTTCATTGT
GCTATTTTAAAAGATCAAATGCAAGCTGATACTTCAATAGCTAAGCGTTTGACATGCGTT
CTACTTGCTGCTTTAAGAACATCAGGCAGTAGTGGCTGTCATGTGACTCTCAATAAATCA
GATTCTTATATGCAAGAATTTTATGGCAAACTTGGATTTACTGAGATTTATGAAGAAGGA
ACAAAAATAATTTTAGGGAGAAACTTTTAG
>g2146.t1 Gene=g2146 Length=949
MSNSPQKFGQDDEESRKFLLGVVEGFYGRPFTSEQRKNLFKKLKKFGHQLYIYAPKDDLK
HRAAWRELYTVEEGEHLQGLINAAKSSGILFFYALSPGLDITYSSLKDTACLKRKLDQVN
QLGCQNFALLFDDIDSEMSKADKEIFQSFAHAQVSVSNEIYNHLSRIQSNCFNFLFCPTQ
YCSSRAVPNVVESEYLNTIGQKLLPNIDILWTGNKVISKIISVEDVLEINEVLRRKVMIW
DNLHANDFDQKRIFLGPYCGRDCELIPLLRGVVTNPNCEFHGNTIAIHTLAQWSRCESQV
NVESISDIKLETENDDCDETKLNYLTERTYHPRVALQNAIRDWLDDFFEEKKVYGRMIKP
HPGSALTPIVIPPIPKINTCMSLTLPTATSPSSSAPISVPEVPQLQALAEICSAVPVSNE
ALVKASVMNSLVSNTKVVTTNAINAPLLATIESNVDLSDKIMPSTADIMEIEKASLETEE
GEAMDCGTPKHTLSDNSSMNSEPTKEEHDSSGNVNGKNLTPDDNDKTEKSQLSDDVVMVD
SNNDHEIMQDESLSEEEKNEPITYDDVLLLCDLFYLPFEHGKQGLNLLNEFHWLKMNAFV
LSERKKKSNDDSTNTQEWLDRSKNFLKLCDSVYKLMRKIALCVNREIAYDLYTYTWEMSA
VVSICDSYIRWLELGNFPQNANSFIQGNYTWFSKGWKETFMSGEQEPWIFRGGLIVDIQR
LIPIDSANDLFIYRLPETTTLNFFHVRPYNYLDESEVYKICHRTCFDGNDCTNLFPQSLQ
DIAADRLVAPFVTLNPEFCLVVENGKKVLIGYACAALNAKDFYRSQETLWLPIAREKYPL
SLLEMPEITPAAKDAINWFHNFKYDCIQNVLQQYPSIVHCAILKDQMQADTSIAKRLTCV
LLAALRTSGSSGCHVTLNKSDSYMQEFYGKLGFTEIYEEGTKIILGRNF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2146.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 19 | 330 | 1.9E-95 |
| 9 | g2146.t1 | Gene3D | G3DSA:1.20.58.240 | STAT; domain 1 | 549 | 700 | 8.2E-36 |
| 8 | g2146.t1 | Gene3D | G3DSA:3.40.630.30 | - | 743 | 949 | 1.0E-43 |
| 6 | g2146.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 535 | - |
| 7 | g2146.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 535 | - |
| 2 | g2146.t1 | PANTHER | PTHR13170:SF16 | PROTEIN O-GLCNACASE | 9 | 948 | 0.0 |
| 3 | g2146.t1 | PANTHER | PTHR13170 | O-GLCNACASE | 9 | 948 | 0.0 |
| 1 | g2146.t1 | Pfam | PF07555 | beta-N-acetylglucosaminidase | 21 | 307 | 9.9E-77 |
| 5 | g2146.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 18 | 306 | 2.21E-96 |
| 4 | g2146.t1 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 746 | 938 | 6.42E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K15719 (protein O-GlcNAcase / histone acetyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
