Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein O-GlcNAcase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2146 g2146.t4 isoform g2146.t4 15579904 15581904
chr_3 g2146 g2146.t4 exon g2146.t4.exon1 15579904 15581386
chr_3 g2146 g2146.t4 cds g2146.t4.CDS1 15579906 15581348
chr_3 g2146 g2146.t4 exon g2146.t4.exon2 15581461 15581904
chr_3 g2146 g2146.t4 TSS g2146.t4 15581992 15581992
chr_3 g2146 g2146.t4 TTS g2146.t4 NA NA

Sequences

>g2146.t4 Gene=g2146 Length=1927
ATGTCAAATTCACCACAAAAATTTGGTCAAGACGATGAAGAATCAAGAAAGTTTCTATTG
GGTGTTGTAGAAGGTTTTTATGGCCGGCCTTTTACATCTGAGCAAAGAAAAAATTTATTC
AAAAAATTAAAAAAATTCGGTCATCAGCTGTATATCTATGCACCAAAAGATGATCTAAAG
CATCGAGCTGCATGGAGAGAGTTGTATACAGTTGAAGAAGGAGAGCACCTTCAAGGATTA
ATCAATGCGGCAAAATCATCTGGAATCTTATTTTTCTATGCATTGAGTCCCGGTTTAGAC
ATAACTTACAGGTAGATTTTCTATTAATAAACATACAACTTATTTTTGTATTTATATTCT
TACGGTTCTTTTAAATTTATAGTTCATTAAAAGACACCGCTTGTTTGAAGAGAAAACTCG
ATCAAGTAAATCAATTAGGATGTCAAAACTTTGCACTTCTTTTTGATGACATTGATTCTG
AAATGTCTAAAGCGGACAAAGAAATTTTTCAAAGTTTTGCACATGCTCAAGTCTCAGTGT
CAAATGAAATTTACAATCATCTCAGCCGTATTCAGTCAAATTGCTTCAATTTTTTATTTT
GTCCAACACAATATTGTAGCAGTCGTGCAGTTCCCAATGTCGTTGAAAGCGAATATTTGA
ATACGATAGGACAAAAGTTGCTTCCAAACATTGATATTCTTTGGACTGGCAATAAAGTTA
TAAGCAAAATCATATCTGTAGAGGATGTTTTAGAAATAAATGAAGTGTTAAGAAGGAAAG
TAATGATATGGGACAATCTCCATGCAAACGATTTTGACCAAAAGAGAATTTTTCTTGGAC
CATATTGTGGACGCGATTGCGAATTAATACCTTTATTAAGAGGTGTTGTCACAAACCCAA
ATTGTGAGTTTCATGGCAACACAATTGCTATTCATACACTCGCACAATGGAGTAGATGTG
AGTCACAAGTCAACGTAGAATCCATATCTGATATTAAATTAGAAACAGAAAACGATGACT
GCGATGAAACTAAATTAAATTATTTGACTGAAAGAACTTATCATCCACGCGTGGCGCTAC
AAAATGCAATTAGAGACTGGCTTGATGACTTTTTTGAAGAGAAAAAAGTTTATGGTAGAA
TGATAAAACCACATCCAGGAAGTGCTTTGACACCAATCGTTATACCACCAATTCCAAAAA
TTAATACCTGTATGTCACTTACACTTCCAACAGCTACCTCTCCTTCATCGAGTGCACCAA
TATCTGTTCCTGAAGTTCCTCAATTACAAGCTCTTGCTGAAATTTGTTCAGCAGTGCCCG
TATCAAATGAAGCATTGGTCAAGGCAAGCGTCATGAATTCACTTGTTTCTAACACAAAAG
TAGTAACTACTAATGCAATCAATGCACCATTACTCGCTACAATTGAAAGTAATGTGGACT
TGAGTGATAAAATTATGCCATCAACTGCAGACATAATGGAAATTGAAAAAGCATCACTCG
AAACTGAAGAAGGAGAAGCAATGGATTGTGGTACACCTAAGCACACTTTATCAGATAATT
CAAGCATGAATTCTGAACCAACAAAGGAAGAACATGATTCAAGTGGAAATGTAAATGGAA
AGAATTTAACTCCTGATGACAATGATAAAACAGAAAAATCACAATTATCAGATGATGTAG
TCATGGTTGACTCAAACAATGATCATGAAATCATGCAAGATGAATCTTTATCAGAAGAAG
AAAAAAATGAACCAATAACTTATGATGATGTATTACTTTTGTGTGATTTATTTTATTTAC
CATTTGAACATGGTAAACAAGGACTGAATCTTTTGAATGAATTTCATTGGCTTAAAATGA
ATGCATTTGTCCTGAGCGAAAGAAAAAAGAAATCAAATGATGATTCAACGAATACACAAG
AATGGTT

>g2146.t4 Gene=g2146 Length=481
MSKADKEIFQSFAHAQVSVSNEIYNHLSRIQSNCFNFLFCPTQYCSSRAVPNVVESEYLN
TIGQKLLPNIDILWTGNKVISKIISVEDVLEINEVLRRKVMIWDNLHANDFDQKRIFLGP
YCGRDCELIPLLRGVVTNPNCEFHGNTIAIHTLAQWSRCESQVNVESISDIKLETENDDC
DETKLNYLTERTYHPRVALQNAIRDWLDDFFEEKKVYGRMIKPHPGSALTPIVIPPIPKI
NTCMSLTLPTATSPSSSAPISVPEVPQLQALAEICSAVPVSNEALVKASVMNSLVSNTKV
VTTNAINAPLLATIESNVDLSDKIMPSTADIMEIEKASLETEEGEAMDCGTPKHTLSDNS
SMNSEPTKEEHDSSGNVNGKNLTPDDNDKTEKSQLSDDVVMVDSNNDHEIMQDESLSEEE
KNEPITYDDVLLLCDLFYLPFEHGKQGLNLLNEFHWLKMNAFVLSERKKKSNDDSTNTQE
W

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2146.t4 Gene3D G3DSA:3.20.20.80 Glycosidases 3 194 3.8E-44
6 g2146.t4 Gene3D G3DSA:1.20.58.240 STAT; domain 1 412 481 8.8E-12
5 g2146.t4 MobiDBLite mobidb-lite consensus disorder prediction 340 397 -
2 g2146.t4 PANTHER PTHR13170:SF16 PROTEIN O-GLCNACASE 1 481 1.0E-125
3 g2146.t4 PANTHER PTHR13170 O-GLCNACASE 1 481 1.0E-125
1 g2146.t4 Pfam PF07555 beta-N-acetylglucosaminidase 10 170 6.7E-32
4 g2146.t4 SUPERFAMILY SSF51445 (Trans)glycosidases 12 170 2.74E-45

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed