General information for g2146.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein O-GlcNAcase.
Parent gene
- The parent gene g2146 is located on chr_3: 15580763..15581904 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2146 | g2146.t5 | TTS | g2146.t5 | 15579953 | 15579953 |
| chr_3 | g2146 | g2146.t5 | isoform | g2146.t5 | 15580763 | 15581904 |
| chr_3 | g2146 | g2146.t5 | exon | g2146.t5.exon1 | 15580763 | 15581386 |
| chr_3 | g2146 | g2146.t5 | cds | g2146.t5.CDS1 | 15580764 | 15581386 |
| chr_3 | g2146 | g2146.t5 | exon | g2146.t5.exon2 | 15581461 | 15581522 |
| chr_3 | g2146 | g2146.t5 | cds | g2146.t5.CDS2 | 15581461 | 15581522 |
| chr_3 | g2146 | g2146.t5 | exon | g2146.t5.exon3 | 15581594 | 15581904 |
| chr_3 | g2146 | g2146.t5 | cds | g2146.t5.CDS3 | 15581594 | 15581904 |
| chr_3 | g2146 | g2146.t5 | TSS | g2146.t5 | 15581992 | 15581992 |
Sequences
>g2146.t5 Gene=g2146 Length=997
ATGTCAAATTCACCACAAAAATTTGGTCAAGACGATGAAGAATCAAGAAAGTTTCTATTG
GGTGTTGTAGAAGGTTTTTATGGCCGGCCTTTTACATCTGAGCAAAGAAAAAATTTATTC
AAAAAATTAAAAAAATTCGGTCATCAGCTGTATATCTATGCACCAAAAGATGATCTAAAG
CATCGAGCTGCATGGAGAGAGTTGTATACAGTTGAAGAAGGAGAGCACCTTCAAGGATTA
ATCAATGCGGCAAAATCATCTGGAATCTTATTTTTCTATGCATTGAGTCCCGGTTTAGAC
ATAACTTACAGTTCATTAAAAGACACCGCTTGTTTGAAGAGAAAACTCGATCAAGTAAAT
CAATTAGGATGTCAAAACTTTGCACTTCTTTTTGATGACATTGATTCTGAAATGTCTAAA
GCGGACAAAGAAATTTTTCAAAGTTTTGCACATGCTCAAGTCTCAGTGTCAAATGAAATT
TACAATCATCTCAGCCGTATTCAGTCAAATTGCTTCAATTTTTTATTTTGTCCAACACAA
TATTGTAGCAGTCGTGCAGTTCCCAATGTCGTTGAAAGCGAATATTTGAATACGATAGGA
CAAAAGTTGCTTCCAAACATTGATATTCTTTGGACTGGCAATAAAGTTATAAGCAAAATC
ATATCTGTAGAGGATGTTTTAGAAATAAATGAAGTGTTAAGAAGGAAAGTAATGATATGG
GACAATCTCCATGCAAACGATTTTGACCAAAAGAGAATTTTTCTTGGACCATATTGTGGA
CGCGATTGCGAATTAATACCTTTATTAAGAGGTGTTGTCACAAACCCAAATTGTGAGTTT
CATGGCAACACAATTGCTATTCATACACTCGCACAATGGAGTAGATGTGAGTCACAAGTC
AACGTAGAATCCATATCTGATATTAAATTAGAAACAGAAAACGATGACTGCGATGAAACT
AAATTAAATTATTTGACTGAAAGAACTTATCATCCAC
>g2146.t5 Gene=g2146 Length=332
MSNSPQKFGQDDEESRKFLLGVVEGFYGRPFTSEQRKNLFKKLKKFGHQLYIYAPKDDLK
HRAAWRELYTVEEGEHLQGLINAAKSSGILFFYALSPGLDITYSSLKDTACLKRKLDQVN
QLGCQNFALLFDDIDSEMSKADKEIFQSFAHAQVSVSNEIYNHLSRIQSNCFNFLFCPTQ
YCSSRAVPNVVESEYLNTIGQKLLPNIDILWTGNKVISKIISVEDVLEINEVLRRKVMIW
DNLHANDFDQKRIFLGPYCGRDCELIPLLRGVVTNPNCEFHGNTIAIHTLAQWSRCESQV
NVESISDIKLETENDDCDETKLNYLTERTYHP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2146.t5 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 19 | 329 | 0 |
| 2 | g2146.t5 | PANTHER | PTHR13170 | O-GLCNACASE | 9 | 330 | 0 |
| 1 | g2146.t5 | Pfam | PF07555 | beta-N-acetylglucosaminidase | 21 | 308 | 0 |
| 3 | g2146.t5 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 18 | 305 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed