General information for g2158.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2158 is located on chr_3: 15689480..15691279 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2158 | g2158.t1 | TSS | g2158.t1 | 15688551 | 15688551 |
| chr_3 | g2158 | g2158.t1 | isoform | g2158.t1 | 15689480 | 15691279 |
| chr_3 | g2158 | g2158.t1 | exon | g2158.t1.exon1 | 15689480 | 15691279 |
| chr_3 | g2158 | g2158.t1 | cds | g2158.t1.CDS1 | 15689480 | 15691279 |
| chr_3 | g2158 | g2158.t1 | TTS | g2158.t1 | NA | NA |
Sequences
>g2158.t1 Gene=g2158 Length=1800
ATGGTGAAATTCGGTTGCGAATTTTGTTACATAGAAGACAAATTTTCAGAAAAAACAGTG
TACACAGCTATCGTTTTTAATAAATCAATTTCTTATTTTTCTGAAGTTGAATGTGGACCA
CATATTGATGAAAAGACAAATAATGACGTCACTGCTATACTTTTTGAAGCCTGTGAAATG
GAGAGATTTCCTCAAAATACTAACGAAATATTCCCTAATTTGACGTTTATTGGAATCTAC
AAATCAGATTTGAATGCAATAAGACGGGATGACTTTGAAGGCTTAAAAAAAGTCACTACA
TTAGTCATTCAAAAAACCAAAATTGAATTCTTGTCAGAAAATACGTTTTCGAAAATAAGG
CAATTAGAAATATTAGTTCTTCAAGAAAACAATATCAAATATATAGAACCAGGTCTATTT
GAAGAGATGAAACAGCTTAAACATGTTGATTTATTTAAGAACCCTAATATCAACTTGTGT
TATTCAATTCTCTTTGATAATCATAATATTGATTCACTTGATGAACTACGTATGAAAATT
TTTAAAAAGTTTTCATGCCAATTTAACGATAAAGAGAATAAAACAAATCAAGAACTTGAA
AGTAAAATTTCCGAACTAAATGATGAAATCAACGAACTAAAAAATGAAAATTCCAGACTC
ATGAATGAATTGAATGAAAAACTAAAAGCAGAAATGACACCAAATAGGAAAATGCCTAAT
TTCAAAAAAATTTATAAGAAAATTCTTCAAAGTTTAAGACAAATATGGCTAATAACAGTG
TTGACACTTGCATGTGTACTGTTGAAGAATTTAGATATAATTGATCATTTTTGTATTTTC
AACAGGATTGCTTCATGTCAAGAATTTGAACAAAATATTATTTATAACTACAGTGAGATA
AGATCAAATTTATTTTGTCATATAAATCAATTGAATGACAAGTCAATTAATAATATTTTA
AATGATGAAGTATCTTTAAGAATACAGTTACCTCTTGATGAACAAACACCAGAAGAAGTC
TTCATGAACACGTTATTTTTGAAACTTTCCGGATATATTGAAACACCAACTTGTGAAGAA
AATAATAATATAGTTATTCTACAAATTAAATGTGATTTCATGATTATAACTTTAATGCCT
ATTAATGAAGAAGTTTATAATGCAAAAGTTGCTTCTCAAAACATAGACGACCATGACGGA
GTTATCTATAAAGGATATCATATTGATGATAAAACTAATAATGATGTAACTGGTTTATAT
TATAAAAATTGTGATTTTATAAAATTCCCACAAAAAGTCACAAAAACTTTTCCAAGTTTG
AAATTTTTTGGTATTCACTCTTCAAATTTGAGCATCATTACAAAAAATGATTTACGAGAT
TTGACAAATTTGAAAGATATAAGGTTTTACTACACACAATTAGTTTTCCTACCTAAAGAT
TTATTTGAAAGTATGAAATTTCTTGAAATCATAGTTTTTGAAGGAAATCAGTTAAAACAT
ATCGAACCAAAACTATTTGCAGAATTACCAAATTTAAAGCATATTGAATTTTCTCAAAAT
TCAATTTTAAATTTTCGATATTCAATATTAAATGGTCAAAAGCACGAACTTGAACTTTCG
GAATTCATCAATAAATTAATTAGTAATTTAAGCTGTTCTGTAATTGTTGAAGATATTAAA
CCTAAAGAAAGTATCAAAAATATAAGTGAATGGTCATTTTGGCAAATTTATTTGTTCTTT
TCTCATATCTTTCATATTGGAGTACTAACATTTTTGATTAAATCAAAATCAAATAGATAG
>g2158.t1 Gene=g2158 Length=599
MVKFGCEFCYIEDKFSEKTVYTAIVFNKSISYFSEVECGPHIDEKTNNDVTAILFEACEM
ERFPQNTNEIFPNLTFIGIYKSDLNAIRRDDFEGLKKVTTLVIQKTKIEFLSENTFSKIR
QLEILVLQENNIKYIEPGLFEEMKQLKHVDLFKNPNINLCYSILFDNHNIDSLDELRMKI
FKKFSCQFNDKENKTNQELESKISELNDEINELKNENSRLMNELNEKLKAEMTPNRKMPN
FKKIYKKILQSLRQIWLITVLTLACVLLKNLDIIDHFCIFNRIASCQEFEQNIIYNYSEI
RSNLFCHINQLNDKSINNILNDEVSLRIQLPLDEQTPEEVFMNTLFLKLSGYIETPTCEE
NNNIVILQIKCDFMIITLMPINEEVYNAKVASQNIDDHDGVIYKGYHIDDKTNNDVTGLY
YKNCDFIKFPQKVTKTFPSLKFFGIHSSNLSIITKNDLRDLTNLKDIRFYYTQLVFLPKD
LFESMKFLEIIVFEGNQLKHIEPKLFAELPNLKHIEFSQNSILNFRYSILNGQKHELELS
EFINKLISNLSCSVIVEDIKPKESIKNISEWSFWQIYLFFSHIFHIGVLTFLIKSKSNR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2158.t1 | Coils | Coil | Coil | 189 | 230 | - |
| 11 | g2158.t1 | Coils | Coil | Coil | 596 | 599 | - |
| 9 | g2158.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 202 | 1.7E-15 |
| 8 | g2158.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 381 | 561 | 1.6E-18 |
| 3 | g2158.t1 | PANTHER | PTHR45836:SF4 | PROTEIN SLIT | 49 | 167 | 2.5E-21 |
| 5 | g2158.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 49 | 167 | 2.5E-21 |
| 4 | g2158.t1 | PANTHER | PTHR45836:SF4 | PROTEIN SLIT | 445 | 552 | 2.5E-21 |
| 6 | g2158.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 445 | 552 | 2.5E-21 |
| 2 | g2158.t1 | Pfam | PF13855 | Leucine rich repeat | 97 | 154 | 3.0E-10 |
| 1 | g2158.t1 | Pfam | PF13855 | Leucine rich repeat | 473 | 522 | 6.7E-7 |
| 13 | g2158.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 570 | - |
| 14 | g2158.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 571 | 593 | - |
| 12 | g2158.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 594 | 599 | - |
| 18 | g2158.t1 | SMART | SM00369 | LRR_typ_2 | 95 | 118 | 140.0 |
| 19 | g2158.t1 | SMART | SM00369 | LRR_typ_2 | 119 | 142 | 5.6 |
| 20 | g2158.t1 | SMART | SM00369 | LRR_typ_2 | 461 | 484 | 22.0 |
| 17 | g2158.t1 | SMART | SM00369 | LRR_typ_2 | 485 | 508 | 27.0 |
| 16 | g2158.t1 | SMART | SM00369 | LRR_typ_2 | 509 | 532 | 170.0 |
| 7 | g2158.t1 | SUPERFAMILY | SSF52058 | L domain-like | 32 | 527 | 1.36E-17 |
| 15 | g2158.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 571 | 593 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
