General information for g2161.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2161 is located on chr_3: 15728514..15736618 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2161 | g2161.t1 | isoform | g2161.t1 | 15728514 | 15736618 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon1 | 15728514 | 15728535 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS1 | 15728514 | 15728535 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon2 | 15731976 | 15732135 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS2 | 15731976 | 15732135 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon3 | 15732197 | 15734560 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS3 | 15732197 | 15734560 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon4 | 15734620 | 15734753 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS4 | 15734620 | 15734753 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon5 | 15734815 | 15735011 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS5 | 15734815 | 15735011 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon6 | 15735167 | 15735475 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS6 | 15735167 | 15735475 |
| chr_3 | g2161 | g2161.t1 | exon | g2161.t1.exon7 | 15735533 | 15736618 |
| chr_3 | g2161 | g2161.t1 | cds | g2161.t1.CDS7 | 15735533 | 15736618 |
| chr_3 | g2161 | g2161.t1 | TSS | g2161.t1 | NA | NA |
| chr_3 | g2161 | g2161.t1 | TTS | g2161.t1 | NA | NA |
Sequences
>g2161.t1 Gene=g2161 Length=4272
ATGACCGTTGATGAACTGACCGATAAGTTACTTTATCCATGCTTCGTGTGTAAGCAAGAA
AATTGTAGTCGCACGAGACCACTTGAGAAAACAAAGGCTCAACAATATGGACTGAATGAA
GACAACATTCCAACTGGTGCTCGAGTTTGTAATAATTGTCAATGTAAAGCTGTCAAGTCA
AGATTTTCAAACACAAACTGCCCATTGCCAACATGCCCAAATCCAAAGGATCGTGTAAAA
CGTTTCCGTAATTTACCAGCAAGACTTTTTGAATTGGCACCAGAAGAACGCGATCCAATT
ATAAAAGAGCTTCAAATTCCACCAAATGTTACAAAATGCTGTTCTGCATGTCTAACAAGA
ATTAAGCGCAAAATGGGCGCTCATTTACTTGGCACAACATCGCTTAGTGATGATGAAATT
CAGCAGTTGCGTAATAAACTGCAAGACATCGGACCGAAATGGAGTCAACTTGCTGACCAA
CTTAATAAATCAGCTACGGTGCTTAAGACATTCTACTATAATTATAAGAAAAAATATGGC
TTCGATCAGGCTGTGAATGAATATTATAAGATGCATGCGAATGAAGATCGTCGTGCAATA
ACGGATGGTGATGAATCGGATGTTAGTGTAACATCATCTGATGACAATGGATCTGATACG
CATAAGAATGAGCTCAATGATTGTGAAAAGATGGATACAAATGCTGTATTGATTGTGAAA
AGTGAGCCACTTATAATTTCATCTACACCAACATCGATAGCATCAATGTCTTCGAATAAG
GACATTGTAACAAAGAATGAACCACAGCCACCAACAACGACTGCAAATACTGCACAAGTA
CAAGTGATTGATGACAGATTGCCACCACCACTTGGTCAACCACCACCATTGCTTAGTTCA
CAACAAATTCAAAATTTAAGCACATCAGGCATGTCACGTGGACCTGAATCTCATCCATTA
ATTTCAATAATGCGAACAAAAAAACATTCAGAAGAATATGATAGTTCTGCAACTGAAACA
GCAGATGAAGAAAATGAATCTTCACCAGCAAATCGTCAAAGTCCAAAAGCAGTTTTTGCT
GGTAAAGGTTTAAATCCTGCTACAACTATTTCAATGGTTCCAACAGTTCCACCACAACAA
CAGAATGGTCCACTTTCAAATGTTCGTGATGTTTTGCATAATGTGATTGAAAGAACATTG
AAAAATCCAGGTGGTGCGGTGCCTCCTTTGAAGCATAATCCAGTTGATACAAATCCTGAT
GTTTCATTTGTTAGTGCTTACCGTCAAGATCCAAATAAAATACAAATTCAACCACAAAGA
AGATCAAATTCTGATAGTGGAATTCAAACACTTGCGACATTATCGATTGTAAATTCACAT
GGACAACAACAAAATATTCCTGGACAGAACCAATTGCATCCATTGAATATTTCATCAATT
GCAGCAACAATAACTCCAGTTCCACCGCCACCACAAGCCAATCAGCAACTGCCGCCTAGA
TCGACACCACAGCATATGATACAACAAGATAAAGATATGAAATATCATACTGTTGCTCGT
GCAATTCAACCGCAAGTTCAACATAATGAACCAGAACCACAAACACTTGATTTGAGTATA
AAGAAACCACAACAACAGCAACAACAACCACCAGAAAGAAACTTTCCAGCATTTCAAGCT
AAAGCACCACCACCGCCAACTGCTGGATCAATTTATCGAGGCGATCCAGCTGCCAACATT
CCAAATCAATCGAATTATCTCGCATTTCATCCCGATCAAAGGCCTTCAAAATCGCCCAGC
AATTATATACCGCCACCATTATCACCAGGTCAACGTGTGATGGGCATCCCACCGCCTCAT
TCAATGCAACAGCCACAACAAATTATTTCAAATAAATCAAAAGTTACGCCAAAGTTGAGT
CCAAATGTTCATCATCAAATGCAACAGCAACAAACTAGTGCTCAAGTGCAACAAATGAAT
GGCCCAAAGGGCTCAATTACTAAAGGCACACCAATTAATGATCGTGGTCAACCAATTACA
ATACAAAATGCACGCTATGAAATTCTTAGACATACACCACCATCGGCTGAAAATAAATTT
GGCTCAATTATTGCTGGCACACCAGTCAATATTAATGACAAACGTGTGCATGAATATATG
AAAAATAATCGACATAGTCCCGCTACAAATCAACAAAATCCAACTTCAGCTGCACAAAGT
GGCAGTCCACATCCAACAATTACTTATCGACCGCCTGGCGATTTGAGCAGTACAACACGT
GATCTTGTCTTTAGTGATTATATGATTTCACAACAAATGCACAATCAACAAGTGCGTGGT
GGTGCAAATATGCCAAATACAATCAGCATCATTAGTGGAGGACCAAGTGGTCGACCTGAA
AAGGAATCACCATCACCTCGTAGCATTGCACATTCAAGTTCACCAGCATCACTGTATTAT
GCAGATAAAGATCGTGATCGTGTTGCAAGTGGACAAACTCGTCCTGAATATTTGAGTCGT
TCATCACCAGCTGATCATCATAATAGTAATCCAAGTCCACATCGTACTCCACCACCACAA
AGACAAGGTGTAATAATTCAAAGACATAATAATGCGAGCTCAAAACCACCATCACCAGCT
CCATTAAGACAGGGACATTTTTCACATCATTATTCACAAGGTCACGATGCACTCTCAAAT
CTAGTTGACGTTGCAGTCGCACAACAAGCATTGCCTGTGCCAAATGATAATAGTAGAAGA
CCATCACATATGCCACCAACATCATCAGCCGAAAATCTTTCATCACTTCCACCACCTCGT
GATCGTGGTTATCCATATTTGATTCCAGCTGAAGTTATGGCTTTACAACATCAACAGATT
GATTTAATGAGAAGGCAACAACAGCATGAGTATAATGAAAGAAAAGAACGTGAATTGATT
CAAGAGCGTGAGAGAGATCGCGAAAGAAATCGAGAACGTGATGAACGTGAGACACAAAGA
AGAATTGATGCTGATCTTGCAGAACGCAATTTTGAACGGGATAGAATGGAACAACAATTA
AGAATTTCTTATCAGCCAAGACTTCCATATACTGGTCGTTTACCTGATGAAATCAGCGCT
CAATGTTTGATCAATGCAATAATAACTGAAAATATTTCAAGACCAGCCGATGCACGTGAA
CGATATCCATCACATCCTTTAAATCGTCTTCAGCCATCAGAAAATAATGGAAATTCACAT
TCACCAAATGTCATTAATGTTGATGTAGATTCATCATCAGATCTTTCACGACATTCTTCA
ATTTCAAGTTTACCATCAAAAAATTTGAAATTGAATGACATTACAGATGCAATAATTGCA
AAAGATCCAGCATATATGCATCATCAGCAAGGACCACCAACAAGTGCTTATCATTTGCCA
GCTCATTTAATGAGAACTAGTTTTAGTGGTTCAATTCCAAGTAAAACACCACCAACTCAA
AGCATTGCTCAACAACAGCAATCTTCAATTCCTCAACCAATGGGACAAGAGCAAATTGTT
GCGACTGAACAGTGGAAAATTAATCGAAAACTACAACAGCAACAACAACAAAAAGAAGAA
TTGGCAAAAAGTGGTGTGAATATGCAAGGAAGATCAACACCAGATGAACGTCATGTCATT
CGAATGGCACAATCACCATCGCCAAGAACAAAAATGGCATACGAACCAGTCTCACCACCA
GAGACAAGTTCACATTATCATATTCAACCAAAGATTACAATTAATGCATATGATCAGAGA
AATATGCCAATTGTTCAAGAAAATGCACAAGGTGCTGATGAAAATAAGCTTTTAAAATTG
ATAAATAATCGTCTTGCTGAAGTAATGAGAAATGATGATAAATATCCAAATGAACATCAT
TCTGATGGTAAAGATAGACGTGATGGAGTTTTATATGAACGACCAAGAAGTGGAAATAGT
GTACCAGGCAATGGAATTAATAGTGGCGACAAAAGTCCAGCAAAACGTGAATCTCCACAA
GTCTATGGAAATTTAAGTCGACCATCATCACAACCAGGCAATATGCCATTCCAACCATCA
CCATCGATGTCATTTTTGTATCCATATAGTGCATTGACAATTCCACAAGCAGCTGGTGCA
AATCCAATAATAAGTCCAAAGGCTGCAAATGAAATAATCGATGCAAATCGACAACAACAG
CCACCAGCTCCTCATCTTGAGACACGTCAAGTTCTATCAGAAAATTACGATGCACTTAGT
GATGAAGATTAA
>g2161.t1 Gene=g2161 Length=1423
MTVDELTDKLLYPCFVCKQENCSRTRPLEKTKAQQYGLNEDNIPTGARVCNNCQCKAVKS
RFSNTNCPLPTCPNPKDRVKRFRNLPARLFELAPEERDPIIKELQIPPNVTKCCSACLTR
IKRKMGAHLLGTTSLSDDEIQQLRNKLQDIGPKWSQLADQLNKSATVLKTFYYNYKKKYG
FDQAVNEYYKMHANEDRRAITDGDESDVSVTSSDDNGSDTHKNELNDCEKMDTNAVLIVK
SEPLIISSTPTSIASMSSNKDIVTKNEPQPPTTTANTAQVQVIDDRLPPPLGQPPPLLSS
QQIQNLSTSGMSRGPESHPLISIMRTKKHSEEYDSSATETADEENESSPANRQSPKAVFA
GKGLNPATTISMVPTVPPQQQNGPLSNVRDVLHNVIERTLKNPGGAVPPLKHNPVDTNPD
VSFVSAYRQDPNKIQIQPQRRSNSDSGIQTLATLSIVNSHGQQQNIPGQNQLHPLNISSI
AATITPVPPPPQANQQLPPRSTPQHMIQQDKDMKYHTVARAIQPQVQHNEPEPQTLDLSI
KKPQQQQQQPPERNFPAFQAKAPPPPTAGSIYRGDPAANIPNQSNYLAFHPDQRPSKSPS
NYIPPPLSPGQRVMGIPPPHSMQQPQQIISNKSKVTPKLSPNVHHQMQQQQTSAQVQQMN
GPKGSITKGTPINDRGQPITIQNARYEILRHTPPSAENKFGSIIAGTPVNINDKRVHEYM
KNNRHSPATNQQNPTSAAQSGSPHPTITYRPPGDLSSTTRDLVFSDYMISQQMHNQQVRG
GANMPNTISIISGGPSGRPEKESPSPRSIAHSSSPASLYYADKDRDRVASGQTRPEYLSR
SSPADHHNSNPSPHRTPPPQRQGVIIQRHNNASSKPPSPAPLRQGHFSHHYSQGHDALSN
LVDVAVAQQALPVPNDNSRRPSHMPPTSSAENLSSLPPPRDRGYPYLIPAEVMALQHQQI
DLMRRQQQHEYNERKERELIQERERDRERNRERDERETQRRIDADLAERNFERDRMEQQL
RISYQPRLPYTGRLPDEISAQCLINAIITENISRPADARERYPSHPLNRLQPSENNGNSH
SPNVINVDVDSSSDLSRHSSISSLPSKNLKLNDITDAIIAKDPAYMHHQQGPPTSAYHLP
AHLMRTSFSGSIPSKTPPTQSIAQQQQSSIPQPMGQEQIVATEQWKINRKLQQQQQQKEE
LAKSGVNMQGRSTPDERHVIRMAQSPSPRTKMAYEPVSPPETSSHYHIQPKITINAYDQR
NMPIVQENAQGADENKLLKLINNRLAEVMRNDDKYPNEHHSDGKDRRDGVLYERPRSGNS
VPGNGINSGDKSPAKRESPQVYGNLSRPSSQPGNMPFQPSPSMSFLYPYSALTIPQAAGA
NPIISPKAANEIIDANRQQQPPAPHLETRQVLSENYDALSDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g2161.t1 | Gene3D | G3DSA:1.10.10.60 | - | 136 | 200 | 4.5E-6 |
| 9 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 228 | - |
| 14 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 357 | - |
| 12 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 756 | - |
| 4 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 860 | - |
| 7 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 851 | - |
| 3 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 939 | - |
| 8 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 935 | - |
| 11 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 999 | - |
| 13 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1176 | - |
| 2 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1291 | 1313 | - |
| 6 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1291 | 1355 | - |
| 5 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1320 | 1334 | - |
| 10 | g2161.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1396 | 1423 | - |
| 1 | g2161.t1 | SMART | SM00717 | sant | 131 | 178 | 0.0085 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
