General information for g2180.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin, indirect flight muscle.
Parent gene
- The parent gene g2180 is located on chr_3: 15806870..15808000 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2180 | g2180.t1 | TSS | g2180.t1 | 15806850 | 15806850 |
| chr_3 | g2180 | g2180.t1 | isoform | g2180.t1 | 15806870 | 15808000 |
| chr_3 | g2180 | g2180.t1 | exon | g2180.t1.exon1 | 15806870 | 15808000 |
| chr_3 | g2180 | g2180.t1 | cds | g2180.t1.CDS1 | 15806870 | 15808000 |
| chr_3 | g2180 | g2180.t1 | TTS | g2180.t1 | 15808617 | 15808617 |
Sequences
>g2180.t1 Gene=g2180 Length=1131
ATGTGTGATGATGATGCCGGAGCTCTTGTCATTGACAATGGATCAGGAATGTGCAAAGCT
GGTTTCGCTGGTGATGATGCACCACGTGCTGTCTTTCCATCAATTGTCGGTCGTCCACGC
CATCAAGGTGTAATGGTCGGTATGGGTCAAAAGGACTCGTATGTTGGTGATGAGGCACAA
AGCAAGAGAGGTATTCTTACCTTGAAATATCCAATTGAACACGGGATCATCACTAACTGG
GATGATATGGAAAAGATCTGGCATCACACATTCTACAATGAACTCCGTGTTGCACCCGAA
GAACATCCAGTCTTGCTCACAGAAGCTCCATTGAATCCAAAAGCTAATCGCGAGAAAATG
ACACAAATCATGTTTGAAACTTTCAACTCACCAGCCATGTATGTTGCCATTCAGGCTGTG
CTCTCACTCTATGCCTCAGGTCGTACCACTGGTATTGTCTTGGATTCAGGAGATGGTGTT
TCACACACTGTTCCAATCTATGAAGGTTATGCTTTGCCACATGCCATTCTTCGTCTTGAT
TTGGCTGGTCGTGATTTGACTGACTACTTGATGAAGATTTTGACCGAACGTGGTTATTCA
TTCACAACCACTGCTGAACGTGAAATTGTCCGTGATATTAAGGAAAAGTTGTGCTATGTT
GCATTGGATTTCGAACAAGAAATGGCCACAGCTGCTGCTTCAACCTCATTGGAAAAATCA
TATGAATTGCCTGATGGTCAAGTTATTACCATTGGCAATGAACGTTTCCGTTGCCCAGAA
GCTCTCTTCCAACCATCATTCTTGGGCATGGAATCATGTGGCATTCACGAAACTGTCTAT
AACTCAATCATGAAATGCGATGTTGATATCCGTAAGGACTTGTACGCTAACACAGTTCTC
TCAGGTGGTACAACAATGTACCCAGGTATTGCTGATCGTATGCAAAAGGAAATCACAGCT
TTGGCTCCATCAACAATCAAAATCAAGATCATTGCTCCACCAGAACGTAAATACTCAGTA
TGGATCGGAGGTTCAATCTTGGCATCACTTTCAACCTTCCAACAAATGTGGATCAGCAAG
CAAGAATATGATGAATCAGGCCCAGGCATTGTTCACAGAAAATGCTTCTAA
>g2180.t1 Gene=g2180 Length=376
MCDDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKS
YELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
QEYDESGPGIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g2180.t1 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 182 | 3.6379E-20 |
| 14 | g2180.t1 | Gene3D | G3DSA:3.30.420.40 | - | 9 | 372 | 3.6E-192 |
| 13 | g2180.t1 | Gene3D | G3DSA:3.30.420.40 | - | 139 | 339 | 3.6E-192 |
| 12 | g2180.t1 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 181 | 273 | 3.6E-192 |
| 2 | g2180.t1 | PANTHER | PTHR11937:SF397 | ACTIN, INDIRECT FLIGHT MUSCLE-RELATED | 1 | 375 | 1.6E-260 |
| 3 | g2180.t1 | PANTHER | PTHR11937 | ACTIN | 1 | 375 | 1.6E-260 |
| 6 | g2180.t1 | PRINTS | PR00190 | Actin signature | 27 | 36 | 6.6E-58 |
| 8 | g2180.t1 | PRINTS | PR00190 | Actin signature | 50 | 61 | 6.6E-58 |
| 9 | g2180.t1 | PRINTS | PR00190 | Actin signature | 62 | 84 | 6.6E-58 |
| 5 | g2180.t1 | PRINTS | PR00190 | Actin signature | 116 | 129 | 6.6E-58 |
| 4 | g2180.t1 | PRINTS | PR00190 | Actin signature | 141 | 160 | 6.6E-58 |
| 7 | g2180.t1 | PRINTS | PR00190 | Actin signature | 237 | 253 | 6.6E-58 |
| 1 | g2180.t1 | Pfam | PF00022 | Actin | 4 | 376 | 7.9E-150 |
| 18 | g2180.t1 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 17 | g2180.t1 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 16 | g2180.t1 | ProSitePatterns | PS00432 | Actins signature 2. | 357 | 365 | - |
| 19 | g2180.t1 | SMART | SM00268 | actin_3 | 6 | 376 | 1.1E-240 |
| 11 | g2180.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 4 | 154 | 3.59E-67 |
| 10 | g2180.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 147 | 376 | 7.95E-100 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05692 (actin beta/gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed