General information for g219.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g219 is located on chr_3: 1826241..1828696 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g219 | g219.t1 | isoform | g219.t1 | 1826241 | 1828696 |
| chr_3 | g219 | g219.t1 | exon | g219.t1.exon1 | 1826241 | 1827507 |
| chr_3 | g219 | g219.t1 | cds | g219.t1.CDS1 | 1826241 | 1827507 |
| chr_3 | g219 | g219.t1 | exon | g219.t1.exon2 | 1827673 | 1827894 |
| chr_3 | g219 | g219.t1 | cds | g219.t1.CDS2 | 1827673 | 1827894 |
| chr_3 | g219 | g219.t1 | exon | g219.t1.exon3 | 1827962 | 1828273 |
| chr_3 | g219 | g219.t1 | cds | g219.t1.CDS3 | 1827962 | 1828273 |
| chr_3 | g219 | g219.t1 | exon | g219.t1.exon4 | 1828617 | 1828696 |
| chr_3 | g219 | g219.t1 | cds | g219.t1.CDS4 | 1828617 | 1828696 |
| chr_3 | g219 | g219.t1 | TTS | g219.t1 | 1828806 | 1828806 |
| chr_3 | g219 | g219.t1 | TSS | g219.t1 | NA | NA |
Sequences
>g219.t1 Gene=g219 Length=1881
ATGGCCGATCAAACGCCGTTAAAATCAACTGATCAGCGGCGACTCGATCAAAATAATAAC
ATAAGTAGTATTGATAAAGATAATAATCAGCAAAAATTAAATGTGTGCAATTGCACTAAT
ATAAGCATTATGCAATTATTCCATGAAATGAAACAAGAGTTCCCAAAAGTACCCGATCAC
ATTGTTCATCAACTAGTGACGGAAAATTGTCACAATCGTCGTGCGTGTCTAGAGCAGCTA
CAAAAAGTCGTCTCATCGTCTATGACAACGCCAACTATGTATCCATCAAAATCAATACAC
AATAATAATAATAATCAACAAACAGAGACAAAACGGAGTCCTATTATAAATGGAACAAAA
TCAAAAGAAATTGGTAGTGGAAAAAACGATAACAGTCAAATGGTGAAGCAAATAAATGAA
AGATTCGAAAACATATCAATCAGTTCTTCGTCAGAAGCAACGTCAAGTGATATAAAAATA
ATGAAACGTCCAACAACATTGCCTTTGCGTCGTGCACCCGATCCGCCCACATATTCCTTT
TCCTCAAATCGTTCATCGCCTCTCACATCAGCTACATCGACACCAAGTTCAACTACATCC
GTATCAAGTTTCTCTACAGCTACTACTTCATCACAAATGCACCATAATGTTATTCTCGAT
TCTTCTGCAACTAAAACTGACGATTCATTAAATGTGCAACTAAATGTCAAAGTTTCACCT
ATATCAACAAAACGTCCTGCACCTCCGCCTCCACCACCTGTTAAACCAAACAGCAATAAT
CAAAGATTTACTTCTCATTTATCTGTGCAACCTGAACCGCCATATACAAGTATGCTCGAT
CCAAAAAACAATATGATGTTACCATTTGGTGGTGGAGCAATTGCTAGCACAGGTACGACT
GGTCAAAGAAGCTATACAAATGTAAAATTAACTTTAAGGCAGCCCTCATCATCATCTTCT
TCATCATTAACACCCATAGATATACAAGCTGGTCCTCAAACATTAAGTTATTCCAGTAGT
TCATTCAATGCACAGCAAGGTAGTGAGAGTCATTTAAAAATAACAGTTGCAGGAAATGGA
GAGAGCTGCATACAGGCAGTTCGAACTGCAAAAAATGTACCAGAAATTAATCAAATAGAC
ACAACTATCAACATTGAGGGCAATTATTTGTTGAATGATGACAATCCTCAGTATAGAATT
ATATCAAATCCATTTATTCCGCAAATAGCAGCACTGCCGCAATCAAATGAACGCCGCTTG
ACTGAAGACGAATTACGTCAATTAATAAAGAGACAAATGAAACAAAAAGAATCACTTGAA
TGTGAACTTGAGAAGGAGCGAGAGAAGCTTCAAATGATAAGACTTGACATCATTACATTA
ACAAAACCAGTAATGACGCATTTGGAGTTAAGAGAGCTATGTGATGAAATAACCCGCTTA
CAAACTGTCTGTACGCGGCTTTCAAACGAAATCGATGTAGTTACTTCTCCACCAAGAGCA
ATCGTAAATACTTATTCAAATGCTCCACCTCCCATTCCAAAAGGCCTTGTTTCACGAAAA
GGACATTCACCGAGTAATTCACTCCTGCCTCATTTACAAATGGATACAAGTGGTCTACGA
TATCCAACTAATCAACCTCCAAGTTACCATGATGTAATGCGTGGAGCAACAGAACAACAA
CGTTTACCTATAGATTCAAATCTCATCAATGATGATAGCAAGTGGACTTGCACAATTTGC
ACTTTCCAGAATCATTCCTTATTAAACATATGCGAGACTTGTGAAATGCCGAGAGTACAG
GCATTCCATTTAACTGATTCCAATGTATTGCTGTTATCTGCAAATCAACACCACAAAATT
ATCCACAGTTTCTTTTTGTAA
>g219.t1 Gene=g219 Length=626
MADQTPLKSTDQRRLDQNNNISSIDKDNNQQKLNVCNCTNISIMQLFHEMKQEFPKVPDH
IVHQLVTENCHNRRACLEQLQKVVSSSMTTPTMYPSKSIHNNNNNQQTETKRSPIINGTK
SKEIGSGKNDNSQMVKQINERFENISISSSSEATSSDIKIMKRPTTLPLRRAPDPPTYSF
SSNRSSPLTSATSTPSSTTSVSSFSTATTSSQMHHNVILDSSATKTDDSLNVQLNVKVSP
ISTKRPAPPPPPPVKPNSNNQRFTSHLSVQPEPPYTSMLDPKNNMMLPFGGGAIASTGTT
GQRSYTNVKLTLRQPSSSSSSSLTPIDIQAGPQTLSYSSSSFNAQQGSESHLKITVAGNG
ESCIQAVRTAKNVPEINQIDTTINIEGNYLLNDDNPQYRIISNPFIPQIAALPQSNERRL
TEDELRQLIKRQMKQKESLECELEKEREKLQMIRLDIITLTKPVMTHLELRELCDEITRL
QTVCTRLSNEIDVVTSPPRAIVNTYSNAPPPIPKGLVSRKGHSPSNSLLPHLQMDTSGLR
YPTNQPPSYHDVMRGATEQQRLPIDSNLINDDSKWTCTICTFQNHSLLNICETCEMPRVQ
AFHLTDSNVLLLSANQHHKIIHSFFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g219.t1 | CDD | cd14362 | CUE_TAB2_TAB3 | 43 | 83 | 2.14001E-15 |
| 6 | g219.t1 | Coils | Coil | Coil | 422 | 456 | - |
| 7 | g219.t1 | Coils | Coil | Coil | 470 | 490 | - |
| 4 | g219.t1 | Gene3D | G3DSA:1.10.8.10 | DNA helicase RuvA subunit | 35 | 107 | 2.2E-10 |
| 5 | g219.t1 | Gene3D | G3DSA:2.20.28.140 | - | 569 | 618 | 8.8E-6 |
| 11 | g219.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 15 | g219.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 131 | - |
| 12 | g219.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 200 | - |
| 13 | g219.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 161 | - |
| 14 | g219.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 200 | - |
| 1 | g219.t1 | PANTHER | PTHR46253:SF1 | TAB2 | 39 | 599 | 2.9E-22 |
| 2 | g219.t1 | PANTHER | PTHR46253 | TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB | 39 | 599 | 2.9E-22 |
| 9 | g219.t1 | ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 575 | 594 | - |
| 16 | g219.t1 | ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 571 | 600 | 8.355 |
| 10 | g219.t1 | SMART | SM00547 | zf_4 | 573 | 597 | 9.8E-4 |
| 3 | g219.t1 | SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 571 | 598 | 1.44E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04404 (TAK1-binding protein 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
