General information for g219.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g219 is located on chr_3: 1826241..1828696 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g219 | g219.t2 | isoform | g219.t2 | 1823963 | 1827894 |
| chr_3 | g219 | g219.t2 | exon | g219.t2.exon1 | 1823963 | 1823990 |
| chr_3 | g219 | g219.t2 | TSS | g219.t2 | 1823973 | 1823973 |
| chr_3 | g219 | g219.t2 | exon | g219.t2.exon2 | 1826073 | 1827507 |
| chr_3 | g219 | g219.t2 | cds | g219.t2.CDS1 | 1826241 | 1827507 |
| chr_3 | g219 | g219.t2 | exon | g219.t2.exon3 | 1827673 | 1827894 |
| chr_3 | g219 | g219.t2 | cds | g219.t2.CDS2 | 1827673 | 1827893 |
| chr_3 | g219 | g219.t2 | TTS | g219.t2 | 1828806 | 1828806 |
Sequences
>g219.t2 Gene=g219 Length=1685
ATAACAATTTATTTTGTGAGAAAAAAAAAAAAAAGCGCGAAATTTTCTATAAATAACTGA
CAAAAATATTGCCGCACAAAAAAAGAAAATAAAAAGAATTTATTGCAAAGAAGAAAAAGA
AAGAAAAATAACTGAAAGGAATTTCCCTGACGACATTCGGATAAATTGTGGATAGAAGAA
GCGATGGCTGTCTATTATGGCCGATCAAACGCCGTTAAAATCAACTGATCAGCGGCGACT
CGATCAAAATAATAACATAAGTAGTATTGATAAAGATAATAATCAGCAAAAATTAAATGT
GTGCAATTGCACTAATATAAGCATTATGCAATTATTCCATGAAATGAAACAAGAGTTCCC
AAAAGTACCCGATCACATTGTTCATCAACTAGTGACGGAAAATTGTCACAATCGTCGTGC
GTGTCTAGAGCAGCTACAAAAAGTCGTCTCATCGTCTATGACAACGCCAACTATGTATCC
ATCAAAATCAATACACAATAATAATAATAATCAACAAACAGAGACAAAACGGAGTCCTAT
TATAAATGGAACAAAATCAAAAGAAATTGGTAGTGGAAAAAACGATAACAGTCAAATGGT
GAAGCAAATAAATGAAAGATTCGAAAACATATCAATCAGTTCTTCGTCAGAAGCAACGTC
AAGTGATATAAAAATAATGAAACGTCCAACAACATTGCCTTTGCGTCGTGCACCCGATCC
GCCCACATATTCCTTTTCCTCAAATCGTTCATCGCCTCTCACATCAGCTACATCGACACC
AAGTTCAACTACATCCGTATCAAGTTTCTCTACAGCTACTACTTCATCACAAATGCACCA
TAATGTTATTCTCGATTCTTCTGCAACTAAAACTGACGATTCATTAAATGTGCAACTAAA
TGTCAAAGTTTCACCTATATCAACAAAACGTCCTGCACCTCCGCCTCCACCACCTGTTAA
ACCAAACAGCAATAATCAAAGATTTACTTCTCATTTATCTGTGCAACCTGAACCGCCATA
TACAAGTATGCTCGATCCAAAAAACAATATGATGTTACCATTTGGTGGTGGAGCAATTGC
TAGCACAGGTACGACTGGTCAAAGAAGCTATACAAATGTAAAATTAACTTTAAGGCAGCC
CTCATCATCATCTTCTTCATCATTAACACCCATAGATATACAAGCTGGTCCTCAAACATT
AAGTTATTCCAGTAGTTCATTCAATGCACAGCAAGGTAGTGAGAGTCATTTAAAAATAAC
AGTTGCAGGAAATGGAGAGAGCTGCATACAGGCAGTTCGAACTGCAAAAAATGTACCAGA
AATTAATCAAATAGACACAACTATCAACATTGAGGGCAATTATTTGTTGAATGATGACAA
TCCTCAGTATAGAATTATATCAAATCCATTTATTCCGCAAATAGCAGCACTGCCGCAATC
AAATGAACGCCGCTTGACTGAAGACGAATTACGTCAATTAATAAAGAGACAAATGAAACA
AAAAGAATCACTTGAATGTGAACTTGAGAAGGAGCGAGAGAAGCTTCAAATGATAAGACT
TGACATCATTACATTAACAAAACCAGTAATGACGCATTTGGAGTTAAGAGAGCTATGTGA
TGAAATAACCCGCTTACAAACTGTCTGTACGCGGCTTTCAAACGAAATCGATGTAGTTAC
TTCTC
>g219.t2 Gene=g219 Length=496
MADQTPLKSTDQRRLDQNNNISSIDKDNNQQKLNVCNCTNISIMQLFHEMKQEFPKVPDH
IVHQLVTENCHNRRACLEQLQKVVSSSMTTPTMYPSKSIHNNNNNQQTETKRSPIINGTK
SKEIGSGKNDNSQMVKQINERFENISISSSSEATSSDIKIMKRPTTLPLRRAPDPPTYSF
SSNRSSPLTSATSTPSSTTSVSSFSTATTSSQMHHNVILDSSATKTDDSLNVQLNVKVSP
ISTKRPAPPPPPPVKPNSNNQRFTSHLSVQPEPPYTSMLDPKNNMMLPFGGGAIASTGTT
GQRSYTNVKLTLRQPSSSSSSSLTPIDIQAGPQTLSYSSSSFNAQQGSESHLKITVAGNG
ESCIQAVRTAKNVPEINQIDTTINIEGNYLLNDDNPQYRIISNPFIPQIAALPQSNERRL
TEDELRQLIKRQMKQKESLECELEKEREKLQMIRLDIITLTKPVMTHLELRELCDEITRL
QTVCTRLSNEIDVVTS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g219.t2 | CDD | cd14362 | CUE_TAB2_TAB3 | 43 | 83 | 1.92439E-15 |
| 7 | g219.t2 | Coils | Coil | Coil | 422 | 456 | - |
| 8 | g219.t2 | Coils | Coil | Coil | 470 | 490 | - |
| 6 | g219.t2 | Gene3D | G3DSA:1.10.8.10 | DNA helicase RuvA subunit | 35 | 99 | 1.3E-10 |
| 1 | g219.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 5 | g219.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 131 | - |
| 2 | g219.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 200 | - |
| 3 | g219.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 161 | - |
| 4 | g219.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 200 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K04404 (TAK1-binding protein 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
